Literature DB >> 24046623

5,15-Bis(4-pentyl-oxyphen-yl)porphyrin.

Mathias O Senge1.   

Abstract

In the title compound, C42H42N4O2, the complete molecule is generated by a crystallographic inversion centre. The porphyrin system exhibits a near planar macrocycle conformation with an average deviation from the least-squares plane of the 24 macrocycle atoms of 0.037 (5) Å. The phenyl ipso C atoms are positioned above and below the porphyrin plane by 0.35 (1) Å and the macrocycle shows evidence of in-plane rectangular elongation with N⋯N separations of 3.032 (5) and 2.803 (5) Å. Two intramolecular N-H⋯N hydrogen bonds occur.

Entities:  

Year:  2013        PMID: 24046623      PMCID: PMC3772480          DOI: 10.1107/S160053681301550X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the conformation of porphyrins, see: Scheidt & Lee (1987 ▶); Senge et al. (1997 ▶); Senge (2006 ▶). For the synthesis of such compounds, see: Wiehe et al. (2005 ▶).

Experimental

Crystal data

C42H42N4O2 M = 634.80 Triclinic, a = 9.5222 (6) Å b = 9.5799 (6) Å c = 10.2195 (6) Å α = 67.777 (1)° β = 88.063 (1)° γ = 72.464 (1)° V = 819.49 (9) Å3 Z = 1 Mo Kα radiation μ = 0.08 mm−1 T = 90 K 0.30 × 0.10 × 0.08 mm

Data collection

Bruker SMART APEXII diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.97, T max = 0.99 9093 measured reflections 3606 independent reflections 2489 reflections with I > 2σ(I) R int = 0.039

Refinement

R[F 2 > 2σ(F 2)] = 0.045 wR(F 2) = 0.109 S = 1.04 3606 reflections 219 parameters H-atom parameters constrained Δρmax = 0.27 e Å−3 Δρmin = −0.23 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: XP in SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: XP in SHELXTL. Crystal structure: contains datablock(s) I, 2R. DOI: 10.1107/S160053681301550X/zl2552sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681301550X/zl2552Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C42H42N4O2Z = 1
Mr = 634.80F(000) = 338
Triclinic, P1Dx = 1.286 Mg m3Dm = n/d Mg m3Dm measured by not measured
Hall symbol: -P 1Melting point: n/d K
a = 9.5222 (6) ÅMo Kα radiation, λ = 0.71073 Å
b = 9.5799 (6) ÅCell parameters from 1771 reflections
c = 10.2195 (6) Åθ = 4.5–60.7°
α = 67.777 (1)°µ = 0.08 mm1
β = 88.063 (1)°T = 90 K
γ = 72.464 (1)°Parallelpiped, red
V = 819.49 (9) Å30.30 × 0.10 × 0.08 mm
Bruker SMART APEXII diffractometer3606 independent reflections
Radiation source: fine-focus sealed tube2489 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.039
Detector resolution: 8.3 pixels mm-1θmax = 27.1°, θmin = 2.2°
ω scansh = −12→12
Absorption correction: multi-scan (SADABS; Bruker, 2005)k = −12→12
Tmin = 0.97, Tmax = 0.99l = −13→13
9093 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.045Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.109H-atom parameters constrained
S = 1.04w = 1/[σ2(Fo2) + (0.0433P)2 + 0.1316P] where P = (Fo2 + 2Fc2)/3
3606 reflections(Δ/σ)max < 0.001
219 parametersΔρmax = 0.27 e Å3
0 restraintsΔρmin = −0.23 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N210.64309 (14)−0.19503 (16)0.46008 (14)0.0171 (3)
H210.5815−0.10690.46270.047 (6)*
N240.36841 (13)−0.12143 (15)0.61217 (14)0.0160 (3)
C10.62390 (16)−0.34160 (19)0.52069 (17)0.0179 (4)
C20.74472 (17)−0.4492 (2)0.48647 (18)0.0190 (4)
H2A0.7600−0.55920.51230.023*
C30.83431 (17)−0.36651 (19)0.41037 (17)0.0185 (4)
H3A0.9229−0.40900.37400.022*
C40.77200 (16)−0.20511 (19)0.39479 (17)0.0169 (4)
C50.83034 (16)−0.07952 (19)0.33369 (17)0.0169 (4)
C160.24129 (16)−0.07563 (19)0.67302 (16)0.0164 (3)
C170.18961 (17)−0.2107 (2)0.74985 (18)0.0195 (4)
H17A0.1041−0.20970.80060.023*
C180.28721 (17)−0.3376 (2)0.73457 (18)0.0198 (4)
H18A0.2843−0.44370.77320.024*
C190.39727 (16)−0.28065 (19)0.64781 (17)0.0172 (4)
C200.51314 (16)−0.37959 (19)0.60556 (17)0.0185 (4)
H20A0.5167−0.48770.63960.022*
C510.98127 (17)−0.11283 (19)0.28262 (17)0.0177 (4)
C521.01657 (17)−0.1671 (2)0.17315 (18)0.0206 (4)
H52A0.9421−0.18590.12860.025*
C531.15769 (17)−0.1945 (2)0.12745 (18)0.0207 (4)
H53A1.1792−0.23160.05270.025*
C541.26742 (16)−0.16720 (19)0.19238 (18)0.0188 (4)
C551.23542 (17)−0.11454 (19)0.30202 (17)0.0192 (4)
H55A1.3103−0.09650.34670.023*
C561.09475 (17)−0.08822 (19)0.34664 (18)0.0192 (4)
H56A1.0744−0.05260.42240.023*
O11.41004 (11)−0.18754 (14)0.15628 (12)0.0226 (3)
C571.45008 (17)−0.2298 (2)0.03660 (18)0.0227 (4)
H57A1.3832−0.1524−0.04880.027*
H57B1.4430−0.33660.05540.027*
C581.60744 (17)−0.2284 (2)0.01421 (18)0.0211 (4)
H58A1.6702−0.29430.10480.025*
H58B1.6106−0.1185−0.01470.025*
C591.66924 (17)−0.2919 (2)−0.09922 (19)0.0249 (4)
H59A1.6492−0.3934−0.07880.030*
H59B1.6167−0.2157−0.19270.030*
C5101.83383 (17)−0.3191 (2)−0.10777 (18)0.0217 (4)
H51A1.8868−0.3995−0.01590.026*
H51B1.8546−0.2190−0.12360.026*
C5111.89275 (18)−0.3744 (2)−0.22522 (19)0.0277 (4)
H51C2.0009−0.4029−0.21820.042*
H51D1.8518−0.2889−0.31750.042*
H51E1.8637−0.4673−0.21590.042*
U11U22U33U12U13U23
N210.0139 (7)0.0134 (7)0.0229 (8)−0.0023 (5)0.0014 (5)−0.0075 (6)
N240.0136 (6)0.0145 (7)0.0195 (7)−0.0030 (5)−0.0003 (5)−0.0071 (6)
C10.0159 (8)0.0165 (8)0.0220 (9)−0.0040 (6)−0.0007 (6)−0.0088 (7)
C20.0184 (8)0.0141 (8)0.0241 (9)−0.0023 (6)0.0006 (7)−0.0090 (7)
C30.0148 (8)0.0197 (9)0.0206 (9)−0.0017 (6)0.0021 (6)−0.0103 (7)
C40.0119 (7)0.0192 (9)0.0184 (9)−0.0012 (6)0.0004 (6)−0.0087 (7)
C50.0151 (8)0.0190 (9)0.0171 (8)−0.0047 (6)0.0008 (6)−0.0078 (7)
C160.0156 (8)0.0186 (9)0.0146 (8)−0.0046 (6)0.0001 (6)−0.0065 (7)
C170.0179 (8)0.0206 (9)0.0199 (9)−0.0071 (7)0.0040 (6)−0.0071 (7)
C180.0193 (8)0.0156 (9)0.0237 (9)−0.0066 (7)0.0022 (7)−0.0059 (7)
C190.0153 (8)0.0159 (8)0.0201 (9)−0.0046 (6)−0.0004 (6)−0.0066 (7)
C200.0180 (8)0.0136 (8)0.0236 (9)−0.0054 (6)−0.0001 (6)−0.0063 (7)
C510.0171 (8)0.0144 (8)0.0191 (9)−0.0031 (6)0.0028 (6)−0.0052 (7)
C520.0183 (8)0.0214 (9)0.0221 (9)−0.0066 (7)0.0012 (7)−0.0080 (8)
C530.0232 (9)0.0212 (9)0.0189 (9)−0.0060 (7)0.0045 (7)−0.0100 (7)
C540.0146 (8)0.0146 (8)0.0222 (9)−0.0026 (6)0.0047 (6)−0.0036 (7)
C550.0193 (8)0.0165 (9)0.0204 (9)−0.0057 (7)−0.0015 (7)−0.0053 (7)
C560.0197 (8)0.0182 (9)0.0184 (9)−0.0034 (7)0.0021 (6)−0.0078 (7)
O10.0168 (6)0.0286 (7)0.0251 (7)−0.0071 (5)0.0065 (5)−0.0135 (6)
C570.0202 (8)0.0268 (10)0.0229 (9)−0.0062 (7)0.0069 (7)−0.0127 (8)
C580.0180 (8)0.0183 (9)0.0233 (9)−0.0047 (7)0.0060 (7)−0.0050 (7)
C590.0204 (9)0.0312 (11)0.0260 (10)−0.0096 (8)0.0071 (7)−0.0135 (8)
C5100.0185 (8)0.0216 (9)0.0237 (9)−0.0046 (7)0.0049 (7)−0.0088 (8)
C5110.0209 (9)0.0360 (11)0.0324 (11)−0.0105 (8)0.0071 (8)−0.0190 (9)
N21—C11.370 (2)C52—H52A0.9500
N21—C41.3722 (19)C53—C541.394 (2)
N21—H210.8800C53—H53A0.9500
N24—C191.367 (2)C54—O11.3710 (18)
N24—C161.3711 (19)C54—C551.384 (2)
C1—C201.388 (2)C55—C561.381 (2)
C1—C21.428 (2)C55—H55A0.9500
C2—C31.362 (2)C56—H56A0.9500
C2—H2A0.9500O1—C571.4335 (19)
C3—C41.427 (2)C57—C581.511 (2)
C3—H3A0.9500C57—H57A0.9900
C4—C51.399 (2)C57—H57B0.9900
C5—C16i1.412 (2)C58—C591.527 (2)
C5—C511.496 (2)C58—H58A0.9900
C16—C5i1.412 (2)C58—H58B0.9900
C16—C171.457 (2)C59—C5101.515 (2)
C17—C181.348 (2)C59—H59A0.9900
C17—H17A0.9500C59—H59B0.9900
C18—C191.448 (2)C510—C5111.514 (2)
C18—H18A0.9500C510—H51A0.9900
C19—C201.396 (2)C510—H51B0.9900
C20—H20A0.9500C511—H51C0.9800
C51—C521.394 (2)C511—H51D0.9800
C51—C561.403 (2)C511—H51E0.9800
C52—C531.389 (2)
C1—N21—C4110.37 (13)C54—C53—H53A120.3
C1—N21—H21124.8O1—C54—C55114.91 (14)
C4—N21—H21124.8O1—C54—C53125.17 (15)
C19—N24—C16105.16 (13)C55—C54—C53119.92 (14)
N21—C1—C20126.59 (15)C56—C55—C54120.09 (15)
N21—C1—C2106.65 (13)C56—C55—H55A120.0
C20—C1—C2126.68 (15)C54—C55—H55A120.0
C3—C2—C1108.13 (15)C55—C56—C51121.49 (16)
C3—C2—H2A125.9C55—C56—H56A119.3
C1—C2—H2A125.9C51—C56—H56A119.3
C2—C3—C4108.17 (14)C54—O1—C57118.76 (12)
C2—C3—H3A125.9O1—C57—C58106.88 (13)
C4—C3—H3A125.9O1—C57—H57A110.3
N21—C4—C5124.67 (14)C58—C57—H57A110.3
N21—C4—C3106.62 (14)O1—C57—H57B110.3
C5—C4—C3128.61 (14)C58—C57—H57B110.3
C4—C5—C16i123.29 (14)H57A—C57—H57B108.6
C4—C5—C51118.72 (14)C57—C58—C59111.63 (14)
C16i—C5—C51117.82 (14)C57—C58—H58A109.3
N24—C16—C5i125.69 (15)C59—C58—H58A109.3
N24—C16—C17110.71 (14)C57—C58—H58B109.3
C5i—C16—C17123.59 (14)C59—C58—H58B109.3
C18—C17—C16106.36 (14)H58A—C58—H58B108.0
C18—C17—H17A126.8C510—C59—C58113.42 (14)
C16—C17—H17A126.8C510—C59—H59A108.9
C17—C18—C19106.69 (15)C58—C59—H59A108.9
C17—C18—H18A126.7C510—C59—H59B108.9
C19—C18—H18A126.7C58—C59—H59B108.9
N24—C19—C20126.46 (14)H59A—C59—H59B107.7
N24—C19—C18111.07 (13)C59—C510—C511113.04 (14)
C20—C19—C18122.44 (15)C59—C510—H51A109.0
C1—C20—C19128.88 (15)C511—C510—H51A109.0
C1—C20—H20A115.6C59—C510—H51B109.0
C19—C20—H20A115.6C511—C510—H51B109.0
C52—C51—C56117.34 (14)H51A—C510—H51B107.8
C52—C51—C5123.54 (14)C510—C511—H51C109.5
C56—C51—C5119.12 (15)C510—C511—H51D109.5
C53—C52—C51121.78 (15)H51C—C511—H51D109.5
C53—C52—H52A119.1C510—C511—H51E109.5
C51—C52—H52A119.1H51C—C511—H51E109.5
C52—C53—C54119.38 (16)H51D—C511—H51E109.5
C52—C53—H53A120.3
C4—N21—C1—C20174.18 (15)C2—C1—C20—C19176.51 (16)
C4—N21—C1—C2−2.51 (18)N24—C19—C20—C10.4 (3)
N21—C1—C2—C31.54 (18)C18—C19—C20—C1178.43 (16)
C20—C1—C2—C3−175.14 (16)C4—C5—C51—C5263.4 (2)
C1—C2—C3—C4−0.05 (19)C16i—C5—C51—C52−121.15 (18)
C1—N21—C4—C5−174.17 (15)C4—C5—C51—C56−116.84 (18)
C1—N21—C4—C32.48 (18)C16i—C5—C51—C5658.6 (2)
C2—C3—C4—N21−1.45 (18)C56—C51—C52—C53−0.7 (2)
C2—C3—C4—C5175.01 (16)C5—C51—C52—C53179.07 (15)
N21—C4—C5—C16i−2.8 (3)C51—C52—C53—C540.0 (2)
C3—C4—C5—C16i−178.73 (16)C52—C53—C54—O1−179.13 (15)
N21—C4—C5—C51172.32 (14)C52—C53—C54—C550.5 (2)
C3—C4—C5—C51−3.6 (3)O1—C54—C55—C56179.34 (14)
C19—N24—C16—C5i179.15 (15)C53—C54—C55—C56−0.4 (2)
C19—N24—C16—C170.37 (17)C54—C55—C56—C51−0.4 (2)
N24—C16—C17—C180.14 (18)C52—C51—C56—C550.9 (2)
C5i—C16—C17—C18−178.68 (15)C5—C51—C56—C55−178.90 (15)
C16—C17—C18—C19−0.56 (18)C55—C54—O1—C57−175.16 (14)
C16—N24—C19—C20177.47 (16)C53—C54—O1—C574.5 (2)
C16—N24—C19—C18−0.72 (17)C54—O1—C57—C58174.70 (13)
C17—C18—C19—N240.84 (19)O1—C57—C58—C59172.84 (13)
C17—C18—C19—C20−177.45 (15)C57—C58—C59—C510−170.19 (15)
N21—C1—C20—C190.5 (3)C58—C59—C510—C511−177.21 (15)
D—H···AD—HH···AD···AD—H···A
N21—H21···N240.882.503.033 (2)119
N21—H21···N24i0.882.222.804 (2)123
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N21—H21⋯N240.882.503.033 (2)119
N21—H21⋯N24i 0.882.222.804 (2)123

Symmetry code: (i) .

  3 in total

1.  Exercises in molecular gymnastics--bending, stretching and twisting porphyrins.

Authors:  Mathias O Senge
Journal:  Chem Commun (Camb)       Date:  2005-10-14       Impact factor: 6.222

2.  Comparative Analysis of the Conformations of Symmetrically and Asymmetrically Deca- and Undecasubstituted Porphyrins Bearing Meso-Alkyl or -Aryl Groups.

Authors:  Mathias O. Senge; Craig J. Medforth; Timothy P. Forsyth; David A. Lee; Marilyn M. Olmstead; Walter Jentzen; Ravindra K. Pandey; John A. Shelnutt; Kevin M. Smith
Journal:  Inorg Chem       Date:  1997-03-12       Impact factor: 5.165

3.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

  3 in total
  2 in total

1.  Weak Interactions and Conformational Changes in Core-Protonated A2- and Ax-Type Porphyrin Dications.

Authors:  Christopher J Kingsbury; Keith J Flanagan; Hans-Georg Eckhardt; Marc Kielmann; Mathias O Senge
Journal:  Molecules       Date:  2020-07-13       Impact factor: 4.411

2.  Crystal structure of 5,10,15-triphenyl-20-(4,4,5,5-tetra-methyl-1,3,2-dioxaborolan-2-yl)porphyrin.

Authors:  Mathias O Senge; Hans-Georg Eckhardt
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-09-06
  2 in total

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