Literature DB >> 24046609

6-Bromo-1,3-bis-[(1,3-dioxolan-2-yl)meth-yl]-1H-imidazo[4,5-b]pyridin-2(3H)-one.

Youssef Kandri Rodi1, Amal Haoudi, Frédéric Capet, Ahmed Mazzah, El Mokhtar Essassi, Lahcen El Ammari.   

Abstract

In the title compound, C14H16BrN3O5, the N atoms adjacent to the carbonyl group in the five-membered ring are substituted by (1,3-dioxolan-2-yl)methyl groups. The fused ring system is essentially planar, with the largest deviation from the mean plane being 0.014 (2) Å for the C atom bearing the Br atom. The first oxolane ring, attached on the side of the N atom belonging to the pyridine ring, has an envelope conformation with one of the O atoms as the flap, whereas the second oxolane ring displays a twisted boat conformation. The two oxolane rings display envelope and twisted boat conformations. In the crystal, mol-ecules are linked by C-H⋯O hydrogen bonds, building chains parallel to the a-axis direction.

Entities:  

Year:  2013        PMID: 24046609      PMCID: PMC3772466          DOI: 10.1107/S1600536813014591

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of imidazo­pyridine derivatives, see: Temple et al. (1987 ▶); Barraclough et al. (1990 ▶); Janssens et al. (1985 ▶); Liu et al. (2008 ▶); Bavetsias et al. (2010 ▶); Coates et al. (1993 ▶); For the chemistry of synthetic dyes, see: Ryabukhin et al. (2006 ▶); Schiffmann et al. (2006 ▶).

Experimental

Crystal data

C14H16BrN3O5 M = 386.21 Monoclinic, a = 5.1144 (1) Å b = 17.8029 (4) Å c = 16.5365 (5) Å β = 97.009 (2)° V = 1494.42 (6) Å3 Z = 4 Mo Kα radiation μ = 2.78 mm−1 T = 296 K 0.15 × 0.07 × 0.02 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.674, T max = 0.936 13392 measured reflections 3421 independent reflections 2632 reflections with I > 2σ(I) R int = 0.027

Refinement

R[F 2 > 2σ(F 2)] = 0.035 wR(F 2) = 0.089 S = 1.02 3421 reflections 208 parameters H-atom parameters constrained Δρmax = 0.45 e Å−3 Δρmin = −0.27 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: APEX2; data reduction: SAINT (Bruker, 2009 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶); software used to prepare material for publication: PLATON (Spek, 2009 ▶) and publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536813014591/fj2631sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813014591/fj2631Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813014591/fj2631Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C14H16BrN3O5F(000) = 784
Mr = 386.21Dx = 1.717 Mg m3
Monoclinic, P21/nMelting point: 446 K
Hall symbol: -P 2ynMo Kα radiation, λ = 0.71073 Å
a = 5.1144 (1) ÅCell parameters from 4379 reflections
b = 17.8029 (4) Åθ = 2.3–25.5°
c = 16.5365 (5) ŵ = 2.78 mm1
β = 97.009 (2)°T = 296 K
V = 1494.42 (6) Å3Needle, white
Z = 40.15 × 0.07 × 0.02 mm
Bruker APEXII CCD diffractometer3421 independent reflections
Radiation source: microfocus source2632 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.027
φ and ω scansθmax = 27.5°, θmin = 1.7°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −6→5
Tmin = 0.674, Tmax = 0.936k = −23→23
13392 measured reflectionsl = −21→20
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.035Hydrogen site location: difference Fourier map
wR(F2) = 0.089H-atom parameters constrained
S = 1.02w = 1/[σ2(Fo2) + (0.0418P)2 + 0.7351P] where P = (Fo2 + 2Fc2)/3
3421 reflections(Δ/σ)max = 0.010
208 parametersΔρmax = 0.45 e Å3
0 restraintsΔρmin = −0.27 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against all reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on all data will be even larger.
xyzUiso*/Ueq
Br11.05083 (6)0.395344 (15)0.301591 (18)0.05380 (12)
C10.8031 (5)0.32618 (13)0.33438 (15)0.0401 (5)
C20.7746 (5)0.32059 (13)0.41724 (15)0.0412 (5)
H20.87600.34850.45700.049*
C30.5856 (5)0.27082 (12)0.43522 (14)0.0371 (5)
C40.4416 (5)0.23061 (12)0.37221 (14)0.0360 (5)
C50.6557 (5)0.28362 (13)0.27657 (15)0.0419 (6)
H50.68550.28900.22250.050*
C60.2946 (5)0.19654 (13)0.49010 (15)0.0411 (6)
C70.6085 (5)0.26864 (15)0.58864 (15)0.0465 (6)
H7A0.79840.27100.58980.056*
H7B0.56920.22890.62540.056*
C80.5135 (5)0.34154 (15)0.61902 (15)0.0444 (6)
H80.61170.35260.67230.053*
C90.3556 (7)0.45586 (17)0.5782 (2)0.0689 (9)
H9A0.25730.47090.52690.083*
H9B0.43730.50000.60490.083*
C100.1799 (6)0.41836 (17)0.6312 (2)0.0583 (7)
H10A0.21360.43650.68680.070*
H10B−0.00390.42690.61110.070*
C110.0926 (5)0.13044 (14)0.36364 (16)0.0432 (6)
H11A−0.00730.15350.31650.052*
H11B−0.03100.11230.39920.052*
C120.2506 (5)0.06459 (13)0.33618 (16)0.0444 (6)
H120.37250.08290.29930.053*
C130.2579 (7)−0.03685 (19)0.4183 (2)0.0718 (10)
H13A0.1987−0.03420.47180.086*
H13B0.3727−0.08010.41690.086*
C140.0312 (6)−0.04352 (16)0.35507 (17)0.0545 (7)
H14A0.0209−0.09360.33180.065*
H14B−0.1320−0.03270.37710.065*
N10.4701 (4)0.23447 (11)0.29392 (12)0.0411 (5)
N20.4931 (4)0.24938 (11)0.50679 (12)0.0406 (5)
N30.2652 (4)0.18604 (10)0.40653 (12)0.0395 (5)
O10.1709 (4)0.16624 (10)0.53895 (11)0.0539 (5)
O20.5490 (4)0.40116 (10)0.56540 (12)0.0518 (5)
O30.2459 (4)0.34071 (11)0.62657 (12)0.0572 (5)
O40.3926 (4)0.02910 (10)0.40233 (13)0.0639 (6)
O50.0812 (4)0.01107 (10)0.29556 (11)0.0549 (5)
U11U22U33U12U13U23
Br10.04950 (18)0.04746 (16)0.0682 (2)−0.00250 (12)0.02211 (14)0.00902 (13)
C10.0395 (13)0.0352 (12)0.0480 (14)0.0052 (10)0.0156 (11)0.0052 (10)
C20.0402 (13)0.0381 (12)0.0456 (14)−0.0001 (10)0.0061 (11)−0.0009 (10)
C30.0411 (13)0.0345 (11)0.0371 (12)0.0033 (10)0.0110 (10)0.0028 (9)
C40.0382 (13)0.0285 (10)0.0421 (13)0.0040 (9)0.0083 (10)0.0012 (9)
C50.0507 (15)0.0361 (12)0.0413 (13)0.0077 (11)0.0154 (11)0.0031 (10)
C60.0449 (14)0.0343 (12)0.0451 (14)0.0067 (10)0.0096 (11)0.0049 (10)
C70.0487 (15)0.0517 (14)0.0390 (13)0.0017 (12)0.0047 (11)0.0042 (11)
C80.0449 (15)0.0550 (15)0.0328 (13)−0.0039 (12)0.0031 (11)−0.0012 (11)
C90.063 (2)0.0536 (17)0.092 (2)0.0057 (15)0.0180 (18)0.0063 (16)
C100.0472 (16)0.0575 (16)0.071 (2)−0.0025 (13)0.0103 (14)−0.0145 (15)
C110.0407 (14)0.0414 (12)0.0466 (14)−0.0022 (11)0.0016 (11)0.0035 (11)
C120.0479 (15)0.0362 (12)0.0474 (14)−0.0016 (11)−0.0010 (12)0.0002 (11)
C130.080 (2)0.065 (2)0.066 (2)−0.0116 (17)−0.0120 (18)0.0195 (16)
C140.0622 (18)0.0474 (15)0.0531 (17)−0.0086 (13)0.0031 (14)0.0015 (12)
N10.0492 (12)0.0361 (10)0.0391 (11)0.0042 (9)0.0094 (9)0.0013 (8)
N20.0464 (12)0.0389 (10)0.0377 (11)−0.0022 (9)0.0093 (9)0.0011 (9)
N30.0444 (12)0.0328 (10)0.0428 (11)−0.0015 (9)0.0110 (9)0.0006 (8)
O10.0597 (12)0.0524 (11)0.0531 (11)−0.0068 (9)0.0206 (9)0.0100 (9)
O20.0510 (11)0.0498 (10)0.0568 (11)−0.0021 (8)0.0158 (9)0.0048 (9)
O30.0526 (12)0.0514 (11)0.0719 (13)−0.0062 (9)0.0248 (10)−0.0048 (9)
O40.0615 (13)0.0453 (10)0.0764 (14)0.0050 (9)−0.0258 (11)0.0006 (10)
O50.0716 (14)0.0457 (10)0.0431 (10)−0.0086 (9)−0.0105 (9)−0.0016 (8)
Br1—C11.893 (2)C9—O21.422 (4)
C1—C51.371 (4)C9—C101.488 (4)
C1—C21.399 (3)C9—H9A0.9700
C2—C31.370 (3)C9—H9B0.9700
C2—H20.9300C10—O31.427 (3)
C3—N21.381 (3)C10—H10A0.9700
C3—C41.398 (3)C10—H10B0.9700
C4—N11.322 (3)C11—N31.452 (3)
C4—N31.375 (3)C11—C121.524 (4)
C5—N11.347 (3)C11—H11A0.9700
C5—H50.9300C11—H11B0.9700
C6—O11.212 (3)C12—O41.389 (3)
C6—N31.385 (3)C12—O51.403 (3)
C6—N21.387 (3)C12—H120.9800
C7—N21.450 (3)C13—O41.403 (4)
C7—C81.494 (4)C13—C141.469 (4)
C7—H7A0.9700C13—H13A0.9700
C7—H7B0.9700C13—H13B0.9700
C8—O31.389 (3)C14—O51.428 (3)
C8—O21.409 (3)C14—H14A0.9700
C8—H80.9800C14—H14B0.9700
C5—C1—C2121.9 (2)O3—C10—H10B111.0
C5—C1—Br1119.34 (18)C9—C10—H10B111.0
C2—C1—Br1118.71 (19)H10A—C10—H10B109.0
C3—C2—C1114.8 (2)N3—C11—C12110.9 (2)
C3—C2—H2122.6N3—C11—H11A109.5
C1—C2—H2122.6C12—C11—H11A109.5
C2—C3—N2133.6 (2)N3—C11—H11B109.5
C2—C3—C4119.4 (2)C12—C11—H11B109.5
N2—C3—C4107.0 (2)H11A—C11—H11B108.0
N1—C4—N3126.2 (2)O4—C12—O5107.53 (19)
N1—C4—C3126.3 (2)O4—C12—C11111.1 (2)
N3—C4—C3107.5 (2)O5—C12—C11110.3 (2)
N1—C5—C1123.5 (2)O4—C12—H12109.3
N1—C5—H5118.2O5—C12—H12109.3
C1—C5—H5118.2C11—C12—H12109.3
O1—C6—N3127.1 (2)O4—C13—C14107.2 (2)
O1—C6—N2126.8 (2)O4—C13—H13A110.3
N3—C6—N2106.1 (2)C14—C13—H13A110.3
N2—C7—C8114.0 (2)O4—C13—H13B110.3
N2—C7—H7A108.7C14—C13—H13B110.3
C8—C7—H7A108.7H13A—C13—H13B108.5
N2—C7—H7B108.7O5—C14—C13104.1 (2)
C8—C7—H7B108.7O5—C14—H14A110.9
H7A—C7—H7B107.6C13—C14—H14A110.9
O3—C8—O2105.6 (2)O5—C14—H14B110.9
O3—C8—C7112.7 (2)C13—C14—H14B110.9
O2—C8—C7111.7 (2)H14A—C14—H14B109.0
O3—C8—H8108.9C4—N1—C5114.0 (2)
O2—C8—H8108.9C3—N2—C6109.6 (2)
C7—C8—H8108.9C3—N2—C7126.3 (2)
O2—C9—C10105.2 (2)C6—N2—C7123.4 (2)
O2—C9—H9A110.7C4—N3—C6109.7 (2)
C10—C9—H9A110.7C4—N3—C11125.6 (2)
O2—C9—H9B110.7C6—N3—C11124.4 (2)
C10—C9—H9B110.7C8—O2—C9106.0 (2)
H9A—C9—H9B108.8C8—O3—C10103.7 (2)
O3—C10—C9103.8 (2)C12—O4—C13107.9 (2)
O3—C10—H10A111.0C12—O5—C14106.51 (19)
C9—C10—H10A111.0
C5—C1—C2—C3−1.3 (3)N3—C6—N2—C7−171.4 (2)
Br1—C1—C2—C3178.13 (17)C8—C7—N2—C387.4 (3)
C1—C2—C3—N2−179.0 (2)C8—C7—N2—C6−103.0 (3)
C1—C2—C3—C40.3 (3)N1—C4—N3—C6179.4 (2)
C2—C3—C4—N11.0 (4)C3—C4—N3—C6−0.4 (3)
N2—C3—C4—N1−179.6 (2)N1—C4—N3—C115.4 (4)
C2—C3—C4—N3−179.2 (2)C3—C4—N3—C11−174.4 (2)
N2—C3—C4—N30.2 (3)O1—C6—N3—C4179.9 (2)
C2—C1—C5—N11.3 (4)N2—C6—N3—C40.4 (3)
Br1—C1—C5—N1−178.18 (18)O1—C6—N3—C11−6.0 (4)
N2—C7—C8—O364.1 (3)N2—C6—N3—C11174.6 (2)
N2—C7—C8—O2−54.6 (3)C12—C11—N3—C468.0 (3)
O2—C9—C10—O3−14.6 (3)C12—C11—N3—C6−105.2 (3)
N3—C11—C12—O460.3 (3)O3—C8—O2—C931.3 (3)
N3—C11—C12—O5179.4 (2)C7—C8—O2—C9154.1 (2)
O4—C13—C14—O512.2 (4)C10—C9—O2—C8−9.6 (3)
N3—C4—N1—C5179.2 (2)O2—C8—O3—C10−40.7 (3)
C3—C4—N1—C5−1.1 (3)C7—C8—O3—C10−162.9 (2)
C1—C5—N1—C40.0 (3)C9—C10—O3—C833.5 (3)
C2—C3—N2—C6179.4 (3)O5—C12—O4—C13−18.7 (3)
C4—C3—N2—C60.1 (3)C11—C12—O4—C13102.1 (3)
C2—C3—N2—C7−9.8 (4)C14—C13—O4—C123.6 (4)
C4—C3—N2—C7170.9 (2)O4—C12—O5—C1426.6 (3)
O1—C6—N2—C3−179.8 (2)C11—C12—O5—C14−94.7 (2)
N3—C6—N2—C3−0.3 (3)C13—C14—O5—C12−23.4 (3)
O1—C6—N2—C79.1 (4)
D—H···AD—HH···AD···AD—H···A
C10—H10B···O2i0.972.363.291 (4)160
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C10—H10B⋯O2i 0.972.363.291 (4)160

Symmetry code: (i) .

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