Literature DB >> 24046586

trans-Di-aqua-bis-(pyridazine-3-carboxyl-ato-κ(2) N (2),O)cobalt(II) dihydrate.

Beñat Artetxe1, Santiago Reinoso, Leire San Felices, Jagoba Martín-Caballero, Juan M Gutiérrez-Zorrilla.   

Abstract

The title compound, [Co(C5H3N2O2)2(H2O)2]·2H2O, contains a Co(II) ion on an inversion center, exhibiting an octa-hedral coordination geometry. The equatorial plane is formed by two trans-related N,O-bidentate pyridazine-3-carboxyl-ate ligands and the axial positions are occupied by two water mol-ecules. The Co(II) complex mol-ecules are stacked in a column along the a-axis direction by an O-H⋯N hydrogen bond between the non-coordinating pyridazine N atom and the coordinating water mol-ecule. These columns are further connected into a layer parallel to the ac plane by additional hydrogen bonds involving the coordinating and non-coordinating water mol-ecules, and the non-coordinating carboxyl-ate O atom. The crystal packing is completed by inter-layer weak C-H⋯O inter-actions.

Entities:  

Year:  2013        PMID: 24046586      PMCID: PMC3772443          DOI: 10.1107/S1600536813017340

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the isotypic zinc(II) and manganese(II) complexes, see: Gryz et al. (2003 ▶); Ardiwlnata et al. (1989 ▶). For a related zinc(II) complex which does not contain non-coordinating water mol­ecules, see: Gryz et al. (2004 ▶).

Experimental

Crystal data

[Co(C5H3N2O2)2(H2O)2]·2H2O M = 377.18 Triclinic, a = 5.2934 (4) Å b = 7.2817 (8) Å c = 9.6196 (9) Å α = 79.673 (8)° β = 89.875 (7)° γ = 72.321 (8)° V = 347.01 (6) Å3 Z = 1 Mo Kα radiation μ = 1.29 mm−1 T = 100 K 0.09 × 0.07 × 0.05 mm

Data collection

Agilent SuperNova diffractometer Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011 ▶) T min = 0.907, T max = 0.967 2202 measured reflections 1369 independent reflections 1309 reflections with I > 2σ(I) R int = 0.018

Refinement

R[F 2 > 2σ(F 2)] = 0.026 wR(F 2) = 0.058 S = 1.08 1369 reflections 122 parameters 4 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.28 e Å−3 Δρmin = −0.31 e Å−3 Data collection: CrysAlis PRO (Agilent, 2011 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: OLEX2 (Dolomanov et al., 2009 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶); software used to prepare material for publication: WinGX (Farrugia, 2012 ▶) and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536813017340/is5284sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813017340/is5284Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Co(C5H3N2O2)2(H2O)2]·2H2OZ = 1
Mr = 377.18F(000) = 193
Triclinic, P1Dx = 1.805 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 5.2934 (4) ÅCell parameters from 1404 reflections
b = 7.2817 (8) Åθ = 2.2–27.8°
c = 9.6196 (9) ŵ = 1.29 mm1
α = 79.673 (8)°T = 100 K
β = 89.875 (7)°Prism, orange
γ = 72.321 (8)°0.09 × 0.07 × 0.05 mm
V = 347.01 (6) Å3
Agilent SuperNova Single source at offset diffractometer1369 independent reflections
Radiation source: SuperNova (Mo) X-ray Source1309 reflections with I > 2σ(I)
Mirror monochromatorRint = 0.018
Detector resolution: 16.2439 pixels mm-1θmax = 26°, θmin = 2.2°
ω scansh = −6→6
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011)k = −8→7
Tmin = 0.907, Tmax = 0.967l = −11→11
2202 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.026Hydrogen site location: difference Fourier map
wR(F2) = 0.058H atoms treated by a mixture of independent and constrained refinement
S = 1.08w = 1/[σ2(Fo2) + (0.0165P)2 + 0.2394P] where P = (Fo2 + 2Fc2)/3
1369 reflections(Δ/σ)max < 0.001
122 parametersΔρmax = 0.28 e Å3
4 restraintsΔρmin = −0.31 e Å3
Experimental. IR (cm-1): 3500(s), 3320(s), 3229(s), 3075(s), 1626(s), 1580(m), 1559(s), 1451(w), 1385(w), 1227(w), 1163(w), 1090(w), 1074(w), 1034(w), 988(m), 851(m), 783(m), 721(m), 675(m), 536(w), 440(w).
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Co10.50.50.50.00870 (12)
O1W0.3333 (3)0.3129 (2)0.41228 (15)0.0114 (3)
N1−0.0009 (3)0.8482 (2)0.40078 (17)0.0106 (3)
O10.7179 (3)0.52521 (19)0.32270 (14)0.0108 (3)
O20.7178 (3)0.7107 (2)0.11041 (14)0.0134 (3)
N20.2411 (3)0.7466 (2)0.36752 (17)0.0097 (3)
O2W0.2458 (3)0.4748 (2)0.13080 (16)0.0164 (3)
C5−0.0299 (4)1.0868 (3)0.1892 (2)0.0143 (4)
H5−0.12681.20740.13060.017*
C70.6162 (4)0.6691 (3)0.2244 (2)0.0105 (4)
C30.3458 (4)0.8063 (3)0.2481 (2)0.0098 (4)
C6−0.1312 (4)1.0140 (3)0.3137 (2)0.0123 (4)
H6−0.30221.08650.33750.015*
C40.2144 (4)0.9783 (3)0.1543 (2)0.0130 (4)
H40.29081.01910.06950.016*
H2WA0.086 (3)0.541 (3)0.122 (3)0.029 (7)*
H1WA0.291 (5)0.359 (3)0.3285 (18)0.024 (7)*
H2WB0.281 (5)0.420 (4)0.062 (2)0.032 (8)*
H1WB0.214 (4)0.281 (4)0.454 (3)0.031 (7)*
U11U22U33U12U13U23
Co10.0088 (2)0.0093 (2)0.00666 (19)−0.00195 (15)0.00114 (14)0.00030 (14)
O1W0.0119 (7)0.0136 (7)0.0087 (7)−0.0048 (6)0.0012 (6)−0.0001 (6)
N10.0095 (8)0.0113 (8)0.0114 (8)−0.0029 (7)0.0008 (6)−0.0036 (7)
O10.0104 (7)0.0111 (7)0.0088 (7)−0.0019 (6)0.0010 (5)0.0012 (5)
O20.0161 (7)0.0143 (7)0.0089 (7)−0.0045 (6)0.0051 (6)−0.0002 (6)
N20.0091 (8)0.0116 (8)0.0096 (8)−0.0040 (7)0.0008 (6)−0.0035 (7)
O2W0.0148 (8)0.0210 (8)0.0127 (8)−0.0029 (7)0.0002 (6)−0.0060 (6)
C50.0163 (10)0.0095 (10)0.0146 (11)−0.0021 (8)−0.0025 (8)0.0009 (8)
C70.0114 (9)0.0104 (9)0.0119 (10)−0.0053 (8)0.0002 (8)−0.0046 (8)
C30.0103 (9)0.0105 (9)0.0097 (9)−0.0037 (8)0.0009 (7)−0.0037 (8)
C60.0106 (10)0.0127 (10)0.0138 (10)−0.0024 (8)0.0005 (8)−0.0049 (8)
C40.0160 (10)0.0129 (10)0.0102 (10)−0.0057 (8)0.0012 (8)0.0002 (8)
Co1—O12.0689 (13)O2—C71.249 (2)
Co1—O1i2.0689 (13)N2—C31.334 (2)
Co1—N2i2.1023 (16)O2W—H2WA0.835 (17)
Co1—N22.1023 (16)O2W—H2WB0.824 (17)
Co1—O1W2.1199 (14)C5—C41.372 (3)
Co1—O1Wi2.1199 (14)C5—C61.395 (3)
O1W—H1WA0.819 (16)C5—H50.95
O1W—H1WB0.822 (17)C7—C31.520 (3)
N1—C61.330 (2)C3—C41.391 (3)
N1—N21.341 (2)C6—H60.95
O1—C71.259 (2)C4—H40.95
O1—Co1—O1i180C3—N2—N1121.11 (16)
O1—Co1—N2i101.76 (6)C3—N2—Co1113.96 (13)
O1i—Co1—N2i78.24 (6)N1—N2—Co1124.73 (12)
O1—Co1—N278.24 (6)H2WA—O2W—H2WB108 (3)
O1i—Co1—N2101.76 (6)C4—C5—C6117.74 (18)
N2i—Co1—N2180C4—C5—H5121.1
O1—Co1—O1W89.54 (5)C6—C5—H5121.1
O1i—Co1—O1W90.46 (5)O2—C7—O1126.21 (18)
N2i—Co1—O1W89.58 (6)O2—C7—C3117.09 (17)
N2—Co1—O1W90.42 (6)O1—C7—C3116.69 (16)
O1—Co1—O1Wi90.46 (5)N2—C3—C4122.10 (18)
O1i—Co1—O1Wi89.54 (5)N2—C3—C7114.00 (16)
N2i—Co1—O1Wi90.42 (6)C4—C3—C7123.89 (17)
N2—Co1—O1Wi89.58 (6)N1—C6—C5123.38 (18)
O1W—Co1—O1Wi180.00 (4)N1—C6—H6118.3
Co1—O1W—H1WA109.3 (17)C5—C6—H6118.3
Co1—O1W—H1WB117.4 (18)C5—C4—C3117.37 (18)
H1WA—O1W—H1WB112 (2)C5—C4—H4121.3
C6—N1—N2118.24 (16)C3—C4—H4121.3
C7—O1—Co1116.67 (12)
N2i—Co1—O1—C7−176.98 (13)Co1—O1—C7—C3−0.1 (2)
N2—Co1—O1—C73.02 (13)N1—N2—C3—C41.8 (3)
O1W—Co1—O1—C793.54 (13)Co1—N2—C3—C4−173.40 (14)
O1Wi—Co1—O1—C7−86.46 (13)N1—N2—C3—C7−177.51 (15)
C6—N1—N2—C3−2.1 (3)Co1—N2—C3—C77.27 (19)
C6—N1—N2—Co1172.59 (13)O2—C7—C3—N2175.85 (16)
O1—Co1—N2—C3−5.73 (12)O1—C7—C3—N2−5.0 (2)
O1i—Co1—N2—C3174.27 (12)O2—C7—C3—C4−3.5 (3)
O1W—Co1—N2—C3−95.18 (13)O1—C7—C3—C4175.72 (17)
O1Wi—Co1—N2—C384.82 (13)N2—N1—C6—C50.4 (3)
O1—Co1—N2—N1179.25 (15)C4—C5—C6—N11.5 (3)
O1i—Co1—N2—N1−0.75 (15)C6—C5—C4—C3−1.7 (3)
O1W—Co1—N2—N189.80 (14)N2—C3—C4—C50.2 (3)
O1Wi—Co1—N2—N1−90.20 (14)C7—C3—C4—C5179.45 (17)
Co1—O1—C7—O2179.04 (15)
D—H···AD—HH···AD···AD—H···A
O2W—H2WA···O2ii0.83 (2)1.96 (2)2.787 (2)175 (2)
O1W—H1WA···O2W0.82 (2)1.92 (2)2.732 (2)171 (3)
O2W—H2WB···O2iii0.83 (2)2.05 (2)2.865 (2)168 (3)
O1W—H1WB···N1iv0.82 (2)2.07 (3)2.862 (2)164 (3)
C4—H4···O2v0.952.373.188 (2)145
C6—H6···O1Wvi0.952.333.264 (3)166
Table 1

Selected bond lengths (Å)

Co1—O12.0689 (13)
Co1—N22.1023 (16)
Co1—O1W 2.1199 (14)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O2W—H2WA⋯O2i 0.83 (2)1.96 (2)2.787 (2)175 (2)
O1W—H1WA⋯O2W 0.82 (2)1.92 (2)2.732 (2)171 (3)
O2W—H2WB⋯O2ii 0.83 (2)2.05 (2)2.865 (2)168 (3)
O1W—H1WB⋯N1iii 0.82 (2)2.07 (3)2.862 (2)164 (3)
C4—H4⋯O2iv 0.952.373.188 (2)145
C6—H6⋯O1W v 0.952.333.264 (3)166

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

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