| Literature DB >> 24046586 |
Beñat Artetxe1, Santiago Reinoso, Leire San Felices, Jagoba Martín-Caballero, Juan M Gutiérrez-Zorrilla.
Abstract
The title compound, [Co(C5H3N2O2)2(H2O)2]·2H2O, contains a Co(II) ion on an inversion center, exhibiting an octa-hedral coordination geometry. The equatorial plane is formed by two trans-related N,O-bidentate pyridazine-3-carboxyl-ate ligands and the axial positions are occupied by two water mol-ecules. The Co(II) complex mol-ecules are stacked in a column along the a-axis direction by an O-H⋯N hydrogen bond between the non-coordinating pyridazine N atom and the coordinating water mol-ecule. These columns are further connected into a layer parallel to the ac plane by additional hydrogen bonds involving the coordinating and non-coordinating water mol-ecules, and the non-coordinating carboxyl-ate O atom. The crystal packing is completed by inter-layer weak C-H⋯O inter-actions.Entities:
Year: 2013 PMID: 24046586 PMCID: PMC3772443 DOI: 10.1107/S1600536813017340
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| [Co(C5H3N2O2)2(H2O)2]·2H2O | |
| Triclinic, | |
| Hall symbol: -P 1 | Mo |
| Cell parameters from 1404 reflections | |
| θ = 2.2–27.8° | |
| µ = 1.29 mm−1 | |
| α = 79.673 (8)° | |
| β = 89.875 (7)° | Prism, orange |
| γ = 72.321 (8)° | 0.09 × 0.07 × 0.05 mm |
| Agilent SuperNova Single source at offset diffractometer | 1369 independent reflections |
| Radiation source: SuperNova (Mo) X-ray Source | 1309 reflections with |
| Mirror monochromator | |
| Detector resolution: 16.2439 pixels mm-1 | θmax = 26°, θmin = 2.2° |
| ω scans | |
| Absorption correction: multi-scan ( | |
| 2202 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: difference Fourier map | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 1369 reflections | (Δ/σ)max < 0.001 |
| 122 parameters | Δρmax = 0.28 e Å−3 |
| 4 restraints | Δρmin = −0.31 e Å−3 |
| Experimental. IR (cm-1): 3500( |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Co1 | 0.5 | 0.5 | 0.5 | 0.00870 (12) | |
| O1W | 0.3333 (3) | 0.3129 (2) | 0.41228 (15) | 0.0114 (3) | |
| N1 | −0.0009 (3) | 0.8482 (2) | 0.40078 (17) | 0.0106 (3) | |
| O1 | 0.7179 (3) | 0.52521 (19) | 0.32270 (14) | 0.0108 (3) | |
| O2 | 0.7178 (3) | 0.7107 (2) | 0.11041 (14) | 0.0134 (3) | |
| N2 | 0.2411 (3) | 0.7466 (2) | 0.36752 (17) | 0.0097 (3) | |
| O2W | 0.2458 (3) | 0.4748 (2) | 0.13080 (16) | 0.0164 (3) | |
| C5 | −0.0299 (4) | 1.0868 (3) | 0.1892 (2) | 0.0143 (4) | |
| H5 | −0.1268 | 1.2074 | 0.1306 | 0.017* | |
| C7 | 0.6162 (4) | 0.6691 (3) | 0.2244 (2) | 0.0105 (4) | |
| C3 | 0.3458 (4) | 0.8063 (3) | 0.2481 (2) | 0.0098 (4) | |
| C6 | −0.1312 (4) | 1.0140 (3) | 0.3137 (2) | 0.0123 (4) | |
| H6 | −0.3022 | 1.0865 | 0.3375 | 0.015* | |
| C4 | 0.2144 (4) | 0.9783 (3) | 0.1543 (2) | 0.0130 (4) | |
| H4 | 0.2908 | 1.0191 | 0.0695 | 0.016* | |
| H2WA | 0.086 (3) | 0.541 (3) | 0.122 (3) | 0.029 (7)* | |
| H1WA | 0.291 (5) | 0.359 (3) | 0.3285 (18) | 0.024 (7)* | |
| H2WB | 0.281 (5) | 0.420 (4) | 0.062 (2) | 0.032 (8)* | |
| H1WB | 0.214 (4) | 0.281 (4) | 0.454 (3) | 0.031 (7)* |
| Co1 | 0.0088 (2) | 0.0093 (2) | 0.00666 (19) | −0.00195 (15) | 0.00114 (14) | 0.00030 (14) |
| O1W | 0.0119 (7) | 0.0136 (7) | 0.0087 (7) | −0.0048 (6) | 0.0012 (6) | −0.0001 (6) |
| N1 | 0.0095 (8) | 0.0113 (8) | 0.0114 (8) | −0.0029 (7) | 0.0008 (6) | −0.0036 (7) |
| O1 | 0.0104 (7) | 0.0111 (7) | 0.0088 (7) | −0.0019 (6) | 0.0010 (5) | 0.0012 (5) |
| O2 | 0.0161 (7) | 0.0143 (7) | 0.0089 (7) | −0.0045 (6) | 0.0051 (6) | −0.0002 (6) |
| N2 | 0.0091 (8) | 0.0116 (8) | 0.0096 (8) | −0.0040 (7) | 0.0008 (6) | −0.0035 (7) |
| O2W | 0.0148 (8) | 0.0210 (8) | 0.0127 (8) | −0.0029 (7) | 0.0002 (6) | −0.0060 (6) |
| C5 | 0.0163 (10) | 0.0095 (10) | 0.0146 (11) | −0.0021 (8) | −0.0025 (8) | 0.0009 (8) |
| C7 | 0.0114 (9) | 0.0104 (9) | 0.0119 (10) | −0.0053 (8) | 0.0002 (8) | −0.0046 (8) |
| C3 | 0.0103 (9) | 0.0105 (9) | 0.0097 (9) | −0.0037 (8) | 0.0009 (7) | −0.0037 (8) |
| C6 | 0.0106 (10) | 0.0127 (10) | 0.0138 (10) | −0.0024 (8) | 0.0005 (8) | −0.0049 (8) |
| C4 | 0.0160 (10) | 0.0129 (10) | 0.0102 (10) | −0.0057 (8) | 0.0012 (8) | 0.0002 (8) |
| Co1—O1 | 2.0689 (13) | O2—C7 | 1.249 (2) |
| Co1—O1i | 2.0689 (13) | N2—C3 | 1.334 (2) |
| Co1—N2i | 2.1023 (16) | O2W—H2WA | 0.835 (17) |
| Co1—N2 | 2.1023 (16) | O2W—H2WB | 0.824 (17) |
| Co1—O1W | 2.1199 (14) | C5—C4 | 1.372 (3) |
| Co1—O1Wi | 2.1199 (14) | C5—C6 | 1.395 (3) |
| O1W—H1WA | 0.819 (16) | C5—H5 | 0.95 |
| O1W—H1WB | 0.822 (17) | C7—C3 | 1.520 (3) |
| N1—C6 | 1.330 (2) | C3—C4 | 1.391 (3) |
| N1—N2 | 1.341 (2) | C6—H6 | 0.95 |
| O1—C7 | 1.259 (2) | C4—H4 | 0.95 |
| O1—Co1—O1i | 180 | C3—N2—N1 | 121.11 (16) |
| O1—Co1—N2i | 101.76 (6) | C3—N2—Co1 | 113.96 (13) |
| O1i—Co1—N2i | 78.24 (6) | N1—N2—Co1 | 124.73 (12) |
| O1—Co1—N2 | 78.24 (6) | H2WA—O2W—H2WB | 108 (3) |
| O1i—Co1—N2 | 101.76 (6) | C4—C5—C6 | 117.74 (18) |
| N2i—Co1—N2 | 180 | C4—C5—H5 | 121.1 |
| O1—Co1—O1W | 89.54 (5) | C6—C5—H5 | 121.1 |
| O1i—Co1—O1W | 90.46 (5) | O2—C7—O1 | 126.21 (18) |
| N2i—Co1—O1W | 89.58 (6) | O2—C7—C3 | 117.09 (17) |
| N2—Co1—O1W | 90.42 (6) | O1—C7—C3 | 116.69 (16) |
| O1—Co1—O1Wi | 90.46 (5) | N2—C3—C4 | 122.10 (18) |
| O1i—Co1—O1Wi | 89.54 (5) | N2—C3—C7 | 114.00 (16) |
| N2i—Co1—O1Wi | 90.42 (6) | C4—C3—C7 | 123.89 (17) |
| N2—Co1—O1Wi | 89.58 (6) | N1—C6—C5 | 123.38 (18) |
| O1W—Co1—O1Wi | 180.00 (4) | N1—C6—H6 | 118.3 |
| Co1—O1W—H1WA | 109.3 (17) | C5—C6—H6 | 118.3 |
| Co1—O1W—H1WB | 117.4 (18) | C5—C4—C3 | 117.37 (18) |
| H1WA—O1W—H1WB | 112 (2) | C5—C4—H4 | 121.3 |
| C6—N1—N2 | 118.24 (16) | C3—C4—H4 | 121.3 |
| C7—O1—Co1 | 116.67 (12) | ||
| N2i—Co1—O1—C7 | −176.98 (13) | Co1—O1—C7—C3 | −0.1 (2) |
| N2—Co1—O1—C7 | 3.02 (13) | N1—N2—C3—C4 | 1.8 (3) |
| O1W—Co1—O1—C7 | 93.54 (13) | Co1—N2—C3—C4 | −173.40 (14) |
| O1Wi—Co1—O1—C7 | −86.46 (13) | N1—N2—C3—C7 | −177.51 (15) |
| C6—N1—N2—C3 | −2.1 (3) | Co1—N2—C3—C7 | 7.27 (19) |
| C6—N1—N2—Co1 | 172.59 (13) | O2—C7—C3—N2 | 175.85 (16) |
| O1—Co1—N2—C3 | −5.73 (12) | O1—C7—C3—N2 | −5.0 (2) |
| O1i—Co1—N2—C3 | 174.27 (12) | O2—C7—C3—C4 | −3.5 (3) |
| O1W—Co1—N2—C3 | −95.18 (13) | O1—C7—C3—C4 | 175.72 (17) |
| O1Wi—Co1—N2—C3 | 84.82 (13) | N2—N1—C6—C5 | 0.4 (3) |
| O1—Co1—N2—N1 | 179.25 (15) | C4—C5—C6—N1 | 1.5 (3) |
| O1i—Co1—N2—N1 | −0.75 (15) | C6—C5—C4—C3 | −1.7 (3) |
| O1W—Co1—N2—N1 | 89.80 (14) | N2—C3—C4—C5 | 0.2 (3) |
| O1Wi—Co1—N2—N1 | −90.20 (14) | C7—C3—C4—C5 | 179.45 (17) |
| Co1—O1—C7—O2 | 179.04 (15) |
| H··· | ||||
| O2 | 0.83 (2) | 1.96 (2) | 2.787 (2) | 175 (2) |
| O1 | 0.82 (2) | 1.92 (2) | 2.732 (2) | 171 (3) |
| O2 | 0.83 (2) | 2.05 (2) | 2.865 (2) | 168 (3) |
| O1 | 0.82 (2) | 2.07 (3) | 2.862 (2) | 164 (3) |
| C4—H4···O2v | 0.95 | 2.37 | 3.188 (2) | 145 |
| C6—H6···O1 | 0.95 | 2.33 | 3.264 (3) | 166 |
Selected bond lengths (Å)
| Co1—O1 | 2.0689 (13) |
| Co1—N2 | 2.1023 (16) |
| Co1—O1 | 2.1199 (14) |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| O2 | 0.83 (2) | 1.96 (2) | 2.787 (2) | 175 (2) |
| O1 | 0.82 (2) | 1.92 (2) | 2.732 (2) | 171 (3) |
| O2 | 0.83 (2) | 2.05 (2) | 2.865 (2) | 168 (3) |
| O1 | 0.82 (2) | 2.07 (3) | 2.862 (2) | 164 (3) |
| C4—H4⋯O2iv | 0.95 | 2.37 | 3.188 (2) | 145 |
| C6—H6⋯O1 | 0.95 | 2.33 | 3.264 (3) | 166 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .