Literature DB >> 24046565

(4,7,13,16,21,24-Hexaoxa-1,10-di-aza-bicyclo-[8.8.8]hexa-cosa-ne)sodium iodide-1,1,2,2,tetra-fluoro-1,2-diiodo-ethane (2/3).

Gabriella Cavallo1, Pierangelo Metrangolo, Tullio Pilati, Giuseppe Resnati, Maurizio Ursini, Giancarlo Terraneo.   

Abstract

The title complex (CX1), [Na(C18H36N2O6)]I·1.5C2F4I2, is a three-component adduct containing a [2.2.2]-cryptand, sodium iodide and 1,1,2,2-tetra-fluoro-1,2-di-iodo-ethane. The di-iodo-ethane works as a bidentate halogen-bonding (XB) donor, the [2.2.2]-cryptand chelates the sodium cation, and the iodide counter-ion acts as a tridentate XB acceptor. A (6,3) network is formed in which iodide anions are the nodes and halocarbons the sides. The network symmetry is C 3i and the I⋯I(-) XB distance is 3.4492 (5) Å. This network is strongly deformed and wrinkled. It forms a layer 9.6686 (18) Å high and the inter-layer distance is 4.4889 (10) Å. The cations, inter-acting with each other via weak O⋯H hydrogen bonds, are confined between two anionic layers and also form a (6,3) net. The structure of CX1 is closely related to that of the KI homologue (CX2). The 1,1,2,2,-tetrafluoro-1,2-diiodoethane molecule is rotationally disordered around the I⋯I axis, resulting in an 1:1 disorder of the C2F4 moiety.

Entities:  

Year:  2013        PMID: 24046565      PMCID: PMC3772422          DOI: 10.1107/S1600536813016085

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For other K2.2.2./salt/haloperfluoro­carbon complexes, see: Fox et al. (2004 ▶); Metrangolo et al. (2004 ▶); Liantonio et al. (2003 ▶, 2006 ▶).

Experimental

Crystal data

[Na(C18H36N2O6)]I−·1.5C2F4I2 M = 1057.11 Trigonal, a = 11.634 (2) Å c = 84.945 (15) Å V = 9957 (4) Å3 Z = 12 Mo Kα radiation μ = 3.84 mm−1 T = 93 K 0.28 × 0.25 × 0.03 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2008 ▶) T min = 0.676, T max = 1.000 47282 measured reflections 2994 independent reflections 2604 reflections with I > 2σ(I) R int = 0.035

Refinement

R[F 2 > 2σ(F 2)] = 0.032 wR(F 2) = 0.076 S = 1.07 2994 reflections 148 parameters 44 restraints H-atom parameters constrained Δρmax = 1.64 e Å−3 Δρmin = −0.58 e Å−3 Data collection: APEX2 (Bruker, 2008 ▶); cell refinement: SAINT (Bruker, 2008 ▶); data reduction: SAINT; program(s) used to solve structure: SIR2002 (Burla et al., 2003 ▶); program(s) used to refine structure: SHELXL2012 (Sheldrick, 2008) ▶; molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶) and Mercury (Macrae et al., 2006 ▶); software used to prepare material for publication: SHELXL2012. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536813016085/kj2225sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813016085/kj2225Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Na(C18H36N2O6)]I·1.5C2F4I2Dx = 2.116 Mg m3
Mr = 1057.11Mo Kα radiation, λ = 0.71073 Å
Trigonal, R3cCell parameters from 20222 reflections
a = 11.634 (2) Åθ = 2.2–29.8°
c = 84.945 (15) ŵ = 3.84 mm1
V = 9957 (4) Å3T = 93 K
Z = 12Hexagonal table, colourless
F(000) = 60120.28 × 0.25 × 0.03 mm
Bruker APEXII CCD diffractometer2604 reflections with I > 2σ(I)
Radiation source: sealed tubeRint = 0.035
φ and ω scansθmax = 30.0°, θmin = 1.4°
Absorption correction: multi-scan (SADABS; Bruker, 2008)h = −15→15
Tmin = 0.676, Tmax = 1.000k = −15→15
47282 measured reflectionsl = −114→114
2994 independent reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.032Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.076H-atom parameters constrained
S = 1.07w = 1/[σ2(Fo2) + (0.040P)2] where P = (Fo2 + 2Fc2)/3
2994 reflections(Δ/σ)max = 0.001
148 parametersΔρmax = 1.64 e Å3
44 restraintsΔρmin = −0.58 e Å3
Experimental. OXFORD low temperature device.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. The tetrafluorodiiodoethane molecule was rotationally disordered. The split model was refined with restraints on geometric parameters and ADPs. The rotation of this molecule around the I···I axis, was so large that SHELXL suggested a second splitting of two F atoms. We considered not useful and even dangerous the suggestion, because the largest correlations between split atoms parameters, already high (<0.87), would be larger.
xyzUiso*/UeqOcc. (<1)
I20.00000.00000.47358 (2)0.01498 (10)
I10.22447 (2)0.05878 (2)0.44381 (2)0.02001 (9)
C70.3618 (9)0.1058 (7)0.42456 (12)0.029 (2)0.5
F10.4634 (7)0.2274 (9)0.42658 (10)0.065 (3)0.5
F20.4115 (9)0.0252 (9)0.42395 (11)0.080 (3)0.5
C80.3016 (8)0.1016 (6)0.40861 (12)0.028 (2)0.5
F30.2439 (9)0.1750 (10)0.40947 (12)0.074 (3)0.5
F40.2054 (7)−0.0222 (8)0.40618 (10)0.083 (4)0.5
Na0.33330.66670.48841 (2)0.0176 (4)
N10.33330.66670.52071 (5)0.0147 (9)
C10.2462 (3)0.5297 (3)0.52603 (3)0.0167 (6)
H1A0.15250.50710.52480.020*
H1B0.26220.52320.53740.020*
C20.2684 (3)0.4311 (3)0.51696 (4)0.0174 (6)
H2A0.35850.44610.51910.021*
H2B0.20290.33970.52020.021*
O10.2542 (2)0.44777 (19)0.50055 (2)0.0159 (4)
C30.2593 (3)0.3468 (3)0.49158 (3)0.0186 (6)
H3A0.18020.25950.49380.022*
H3B0.33940.34220.49440.022*
C40.2632 (3)0.3789 (3)0.47452 (4)0.0186 (6)
H4A0.26020.30670.46800.022*
H4B0.18570.38840.47180.022*
O20.3838 (2)0.5009 (2)0.47155 (3)0.0180 (5)
C50.4235 (3)0.5180 (3)0.45540 (4)0.0198 (6)
H5A0.42100.43630.45160.024*
H5B0.51620.59180.45460.024*
C60.3357 (3)0.5475 (3)0.44487 (3)0.0191 (6)
H6A0.36870.55970.43390.023*
H6B0.24420.47080.44500.023*
N20.33330.66670.44990 (5)0.0173 (9)
U11U22U33U12U13U23
I20.01522 (13)0.01522 (13)0.01451 (17)0.00761 (6)0.0000.000
I10.01636 (13)0.02578 (14)0.01665 (12)0.00961 (9)0.00183 (7)0.00086 (8)
C70.028 (5)0.051 (6)0.021 (5)0.030 (5)0.005 (4)0.002 (4)
F10.025 (3)0.080 (6)0.025 (3)−0.022 (4)0.007 (2)−0.019 (5)
F20.114 (8)0.145 (7)0.058 (6)0.122 (7)0.058 (5)0.066 (5)
C80.017 (5)0.048 (6)0.020 (5)0.017 (4)0.004 (4)0.003 (4)
F30.086 (7)0.137 (7)0.060 (6)0.101 (6)0.046 (5)0.063 (6)
F40.033 (4)0.089 (7)0.028 (3)−0.043 (4)0.009 (3)−0.022 (5)
Na0.0162 (7)0.0162 (7)0.0204 (10)0.0081 (3)0.0000.000
N10.0115 (13)0.0115 (13)0.021 (2)0.0057 (6)0.0000.000
C10.0148 (14)0.0158 (15)0.0172 (14)0.0058 (13)0.0007 (11)0.0012 (11)
C20.0184 (16)0.0147 (15)0.0184 (15)0.0078 (13)−0.0009 (12)0.0023 (11)
O10.0194 (11)0.0140 (11)0.0163 (10)0.0099 (9)0.0001 (8)0.0004 (8)
C30.0219 (16)0.0120 (15)0.0211 (15)0.0079 (13)0.0002 (12)−0.0011 (11)
C40.0167 (15)0.0135 (15)0.0221 (15)0.0049 (13)0.0016 (12)−0.0015 (12)
O20.0182 (11)0.0143 (11)0.0185 (11)0.0058 (9)0.0000 (8)−0.0003 (8)
C50.0192 (16)0.0188 (16)0.0207 (15)0.0091 (13)0.0038 (13)0.0002 (12)
C60.0197 (16)0.0195 (16)0.0168 (14)0.0089 (13)0.0001 (12)−0.0016 (12)
N20.0167 (14)0.0167 (14)0.018 (2)0.0084 (7)0.0000.000
I1—C8i2.153 (11)O1—C31.427 (4)
I1—C72.156 (11)C3—C41.492 (4)
C7—F11.325 (5)C3—H3A0.9900
C7—F21.327 (5)C3—H3B0.9900
C7—C81.514 (7)C4—O21.434 (4)
C8—F41.325 (5)C4—H4A0.9900
C8—F31.327 (5)C4—H4B0.9900
N1—C1ii1.468 (3)O2—C51.430 (4)
N1—C11.468 (3)C5—C61.520 (4)
N1—C1iii1.468 (3)C5—H5A0.9900
C1—C21.508 (4)C5—H5B0.9900
C1—H1A0.9900C6—N21.464 (3)
C1—H1B0.9900C6—H6A0.9900
C2—O11.428 (4)C6—H6B0.9900
C2—H2A0.9900N2—C6iii1.464 (3)
C2—H2B0.9900N2—C6ii1.464 (4)
F1—C7—F2106.7 (7)O1—C3—C4108.7 (2)
F1—C7—C8107.6 (5)O1—C3—H3A109.9
F2—C7—C8107.4 (5)C4—C3—H3A109.9
F1—C7—I1109.0 (5)O1—C3—H3B109.9
F2—C7—I1112.3 (6)C4—C3—H3B109.9
C8—C7—I1113.5 (4)H3A—C3—H3B108.3
F4—C8—F3106.5 (7)O2—C4—C3108.1 (2)
F4—C8—C7107.5 (5)O2—C4—H4A110.1
F3—C8—C7107.7 (5)C3—C4—H4A110.1
F1i—C8—I1i118.8 (9)O2—C4—H4B110.1
F4—C8—I1i110.4 (6)C3—C4—H4B110.1
F3—C8—I1i110.5 (6)H4A—C4—H4B108.4
C7—C8—I1i114.0 (4)C5—O2—C4113.2 (2)
C1ii—N1—C1110.97 (18)O2—C5—C6112.9 (3)
C1ii—N1—C1iii110.97 (18)O2—C5—H5A109.0
C1—N1—C1iii110.97 (18)C6—C5—H5A109.0
N1—C1—C2112.3 (2)O2—C5—H5B109.0
N1—C1—H1A109.1C6—C5—H5B109.0
C2—C1—H1A109.1H5A—C5—H5B107.8
N1—C1—H1B109.1N2—C6—C5112.0 (3)
C2—C1—H1B109.1N2—C6—H6A109.2
H1A—C1—H1B107.9C5—C6—H6A109.2
O1—C2—C1108.6 (2)N2—C6—H6B109.2
O1—C2—H2A110.0C5—C6—H6B109.2
C1—C2—H2A110.0H6A—C6—H6B107.9
O1—C2—H2B110.0C6iii—N2—C6ii111.84 (19)
C1—C2—H2B110.0C6iii—N2—C6111.84 (19)
H2A—C2—H2B108.3C6ii—N2—C6111.84 (18)
C3—O1—C2110.8 (2)
F1—C7—C8—F4176.1 (9)C1iii—N1—C1—C2162.6 (3)
F2—C7—C8—F461.5 (8)N1—C1—C2—O1−54.8 (3)
I1—C7—C8—F4−63.3 (8)C1—C2—O1—C3−173.3 (2)
F1—C7—C8—F3−69.6 (8)C2—O1—C3—C4−172.2 (2)
F2—C7—C8—F3175.9 (7)O1—C3—C4—O263.8 (3)
I1—C7—C8—F351.1 (7)C3—C4—O2—C5158.4 (2)
F1—C7—C8—I1i53.4 (8)C4—O2—C5—C671.9 (3)
F2—C7—C8—I1i−61.2 (7)O2—C5—C6—N258.0 (3)
I1—C7—C8—I1i174.0 (2)C5—C6—N2—C6iii−154.9 (3)
C1ii—N1—C1—C2−73.6 (4)C5—C6—N2—C6ii78.7 (4)
CX1CX2
Hole side111.634 (2)11.7478 (15)
Layer height29.6686 (18)9.6380 (13)
h34.4889 (10)4.5343 (7)
V3303.79 (7)312.89 (6)
M+—O12.460 (2)2.6650 (12)
M+—O22.692 (2)2.7737 (13)
M+—N12.744 (5)2.941 (2)
M+—N23.271 (5)2.985 (3)
X···Y—CCX1 X···YCX1 C—X···YCX2 X···YCX2 C—X···Y
I2···I1—C73.4492 (5)175.99 (17)3.4492 (5)176.30 (16)
I2···I1—C8i3.4492 (5)168.30 (16)3.4492 (5)166.40 (16)
O1···(H3B—C3)ii2.63147.92.60147.6
Table 1

Some parameters (Å, Å3) of the anionic layer and of the cation in the structures CX1 and CX2

 CX1CX2
Hole side1 11.634 (2)11.7478 (15)
Layer height2 9.6686 (18)9.6380 (13)
h 3 4.4889 (10)4.5343 (7)
V 3 303.79 (7)312.89 (6)
M +—O12.460 (2)2.6650 (12)
M +—O22.692 (2)2.7737 (13)
M +—N12.744 (5)2.941 (2)
M +—N23.271 (5)2.985 (3)

Notes: (1) Distance between the nearest iodide anions on the same side of the anionic layer, equal to the cell parameter a; (2) distance between the planes through the iodide anions on the opposite sides of the anionic layer; (3) h = distance between the nearest planes through iodide anions of contiguous layers. (4) V = a 2 h/2, volume of the trigonal prism whose vertices are the three iodide anions on a layer and the same faced on the contiguous one.

Table 2

Halogen and hydrogen bonds (Å, °) in CX1 and CX2

In CX2, the cell origin and the atom numbering are different, so that atom labels and symmetry code refer only to CX1; for CX2 the reported values refer to the equivalent atoms and values.

XY—CCX1 XY CX1 C—XY CX2 XY CX2 C—XY
I2⋯I1—C73.4492 (5)175.99 (17)3.4492 (5)176.30 (16)
I2⋯I1—C8i 3.4492 (5)168.30 (16)3.4492 (5)166.40 (16)
O1⋯(H3B—C3)ii 2.63147.92.60147.6

Symmetry codes: (i) ; (ii) .

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