| Literature DB >> 24046565 |
Gabriella Cavallo1, Pierangelo Metrangolo, Tullio Pilati, Giuseppe Resnati, Maurizio Ursini, Giancarlo Terraneo.
Abstract
The title complex (CX1), [Na(C18H36N2O6)]I·1.5C2F4I2, is a three-component adduct containing a [2.2.2]-cryptand, sodium iodide and 1,1,2,2-tetra-fluoro-1,2-di-iodo-ethane. The di-iodo-ethane works as a bidentate halogen-bonding (XB) donor, the [2.2.2]-cryptand chelates the sodium cation, and the iodide counter-ion acts as a tridentate XB acceptor. A (6,3) network is formed in which iodide anions are the nodes and halocarbons the sides. The network symmetry is C 3i and the I⋯I(-) XB distance is 3.4492 (5) Å. This network is strongly deformed and wrinkled. It forms a layer 9.6686 (18) Å high and the inter-layer distance is 4.4889 (10) Å. The cations, inter-acting with each other via weak O⋯H hydrogen bonds, are confined between two anionic layers and also form a (6,3) net. The structure of CX1 is closely related to that of the KI homologue (CX2). The 1,1,2,2,-tetrafluoro-1,2-diiodoethane molecule is rotationally disordered around the I⋯I axis, resulting in an 1:1 disorder of the C2F4 moiety.Entities:
Year: 2013 PMID: 24046565 PMCID: PMC3772422 DOI: 10.1107/S1600536813016085
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| [Na(C18H36N2O6)]I−·1.5C2F4I2 | |
| Mo | |
| Trigonal, | Cell parameters from 20222 reflections |
| θ = 2.2–29.8° | |
| µ = 3.84 mm−1 | |
| Hexagonal table, colourless | |
| 0.28 × 0.25 × 0.03 mm |
| Bruker APEXII CCD diffractometer | 2604 reflections with |
| Radiation source: sealed tube | |
| φ and ω scans | θmax = 30.0°, θmin = 1.4° |
| Absorption correction: multi-scan ( | |
| 47282 measured reflections | |
| 2994 independent reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 2994 reflections | (Δ/σ)max = 0.001 |
| 148 parameters | Δρmax = 1.64 e Å−3 |
| 44 restraints | Δρmin = −0.58 e Å−3 |
| Experimental. OXFORD low temperature device. |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. The tetrafluorodiiodoethane molecule was rotationally disordered. The split
model was refined with restraints on geometric parameters and ADPs. The
rotation of this molecule around the |
| Occ. (<1) | |||||
| I2 | 0.0000 | 0.0000 | 0.47358 (2) | 0.01498 (10) | |
| I1 | 0.22447 (2) | 0.05878 (2) | 0.44381 (2) | 0.02001 (9) | |
| C7 | 0.3618 (9) | 0.1058 (7) | 0.42456 (12) | 0.029 (2) | 0.5 |
| F1 | 0.4634 (7) | 0.2274 (9) | 0.42658 (10) | 0.065 (3) | 0.5 |
| F2 | 0.4115 (9) | 0.0252 (9) | 0.42395 (11) | 0.080 (3) | 0.5 |
| C8 | 0.3016 (8) | 0.1016 (6) | 0.40861 (12) | 0.028 (2) | 0.5 |
| F3 | 0.2439 (9) | 0.1750 (10) | 0.40947 (12) | 0.074 (3) | 0.5 |
| F4 | 0.2054 (7) | −0.0222 (8) | 0.40618 (10) | 0.083 (4) | 0.5 |
| Na | 0.3333 | 0.6667 | 0.48841 (2) | 0.0176 (4) | |
| N1 | 0.3333 | 0.6667 | 0.52071 (5) | 0.0147 (9) | |
| C1 | 0.2462 (3) | 0.5297 (3) | 0.52603 (3) | 0.0167 (6) | |
| H1A | 0.1525 | 0.5071 | 0.5248 | 0.020* | |
| H1B | 0.2622 | 0.5232 | 0.5374 | 0.020* | |
| C2 | 0.2684 (3) | 0.4311 (3) | 0.51696 (4) | 0.0174 (6) | |
| H2A | 0.3585 | 0.4461 | 0.5191 | 0.021* | |
| H2B | 0.2029 | 0.3397 | 0.5202 | 0.021* | |
| O1 | 0.2542 (2) | 0.44777 (19) | 0.50055 (2) | 0.0159 (4) | |
| C3 | 0.2593 (3) | 0.3468 (3) | 0.49158 (3) | 0.0186 (6) | |
| H3A | 0.1802 | 0.2595 | 0.4938 | 0.022* | |
| H3B | 0.3394 | 0.3422 | 0.4944 | 0.022* | |
| C4 | 0.2632 (3) | 0.3789 (3) | 0.47452 (4) | 0.0186 (6) | |
| H4A | 0.2602 | 0.3067 | 0.4680 | 0.022* | |
| H4B | 0.1857 | 0.3884 | 0.4718 | 0.022* | |
| O2 | 0.3838 (2) | 0.5009 (2) | 0.47155 (3) | 0.0180 (5) | |
| C5 | 0.4235 (3) | 0.5180 (3) | 0.45540 (4) | 0.0198 (6) | |
| H5A | 0.4210 | 0.4363 | 0.4516 | 0.024* | |
| H5B | 0.5162 | 0.5918 | 0.4546 | 0.024* | |
| C6 | 0.3357 (3) | 0.5475 (3) | 0.44487 (3) | 0.0191 (6) | |
| H6A | 0.3687 | 0.5597 | 0.4339 | 0.023* | |
| H6B | 0.2442 | 0.4708 | 0.4450 | 0.023* | |
| N2 | 0.3333 | 0.6667 | 0.44990 (5) | 0.0173 (9) |
| I2 | 0.01522 (13) | 0.01522 (13) | 0.01451 (17) | 0.00761 (6) | 0.000 | 0.000 |
| I1 | 0.01636 (13) | 0.02578 (14) | 0.01665 (12) | 0.00961 (9) | 0.00183 (7) | 0.00086 (8) |
| C7 | 0.028 (5) | 0.051 (6) | 0.021 (5) | 0.030 (5) | 0.005 (4) | 0.002 (4) |
| F1 | 0.025 (3) | 0.080 (6) | 0.025 (3) | −0.022 (4) | 0.007 (2) | −0.019 (5) |
| F2 | 0.114 (8) | 0.145 (7) | 0.058 (6) | 0.122 (7) | 0.058 (5) | 0.066 (5) |
| C8 | 0.017 (5) | 0.048 (6) | 0.020 (5) | 0.017 (4) | 0.004 (4) | 0.003 (4) |
| F3 | 0.086 (7) | 0.137 (7) | 0.060 (6) | 0.101 (6) | 0.046 (5) | 0.063 (6) |
| F4 | 0.033 (4) | 0.089 (7) | 0.028 (3) | −0.043 (4) | 0.009 (3) | −0.022 (5) |
| Na | 0.0162 (7) | 0.0162 (7) | 0.0204 (10) | 0.0081 (3) | 0.000 | 0.000 |
| N1 | 0.0115 (13) | 0.0115 (13) | 0.021 (2) | 0.0057 (6) | 0.000 | 0.000 |
| C1 | 0.0148 (14) | 0.0158 (15) | 0.0172 (14) | 0.0058 (13) | 0.0007 (11) | 0.0012 (11) |
| C2 | 0.0184 (16) | 0.0147 (15) | 0.0184 (15) | 0.0078 (13) | −0.0009 (12) | 0.0023 (11) |
| O1 | 0.0194 (11) | 0.0140 (11) | 0.0163 (10) | 0.0099 (9) | 0.0001 (8) | 0.0004 (8) |
| C3 | 0.0219 (16) | 0.0120 (15) | 0.0211 (15) | 0.0079 (13) | 0.0002 (12) | −0.0011 (11) |
| C4 | 0.0167 (15) | 0.0135 (15) | 0.0221 (15) | 0.0049 (13) | 0.0016 (12) | −0.0015 (12) |
| O2 | 0.0182 (11) | 0.0143 (11) | 0.0185 (11) | 0.0058 (9) | 0.0000 (8) | −0.0003 (8) |
| C5 | 0.0192 (16) | 0.0188 (16) | 0.0207 (15) | 0.0091 (13) | 0.0038 (13) | 0.0002 (12) |
| C6 | 0.0197 (16) | 0.0195 (16) | 0.0168 (14) | 0.0089 (13) | 0.0001 (12) | −0.0016 (12) |
| N2 | 0.0167 (14) | 0.0167 (14) | 0.018 (2) | 0.0084 (7) | 0.000 | 0.000 |
| I1—C8i | 2.153 (11) | O1—C3 | 1.427 (4) |
| I1—C7 | 2.156 (11) | C3—C4 | 1.492 (4) |
| C7—F1 | 1.325 (5) | C3—H3A | 0.9900 |
| C7—F2 | 1.327 (5) | C3—H3B | 0.9900 |
| C7—C8 | 1.514 (7) | C4—O2 | 1.434 (4) |
| C8—F4 | 1.325 (5) | C4—H4A | 0.9900 |
| C8—F3 | 1.327 (5) | C4—H4B | 0.9900 |
| N1—C1ii | 1.468 (3) | O2—C5 | 1.430 (4) |
| N1—C1 | 1.468 (3) | C5—C6 | 1.520 (4) |
| N1—C1iii | 1.468 (3) | C5—H5A | 0.9900 |
| C1—C2 | 1.508 (4) | C5—H5B | 0.9900 |
| C1—H1A | 0.9900 | C6—N2 | 1.464 (3) |
| C1—H1B | 0.9900 | C6—H6A | 0.9900 |
| C2—O1 | 1.428 (4) | C6—H6B | 0.9900 |
| C2—H2A | 0.9900 | N2—C6iii | 1.464 (3) |
| C2—H2B | 0.9900 | N2—C6ii | 1.464 (4) |
| F1—C7—F2 | 106.7 (7) | O1—C3—C4 | 108.7 (2) |
| F1—C7—C8 | 107.6 (5) | O1—C3—H3A | 109.9 |
| F2—C7—C8 | 107.4 (5) | C4—C3—H3A | 109.9 |
| F1—C7—I1 | 109.0 (5) | O1—C3—H3B | 109.9 |
| F2—C7—I1 | 112.3 (6) | C4—C3—H3B | 109.9 |
| C8—C7—I1 | 113.5 (4) | H3A—C3—H3B | 108.3 |
| F4—C8—F3 | 106.5 (7) | O2—C4—C3 | 108.1 (2) |
| F4—C8—C7 | 107.5 (5) | O2—C4—H4A | 110.1 |
| F3—C8—C7 | 107.7 (5) | C3—C4—H4A | 110.1 |
| F1i—C8—I1i | 118.8 (9) | O2—C4—H4B | 110.1 |
| F4—C8—I1i | 110.4 (6) | C3—C4—H4B | 110.1 |
| F3—C8—I1i | 110.5 (6) | H4A—C4—H4B | 108.4 |
| C7—C8—I1i | 114.0 (4) | C5—O2—C4 | 113.2 (2) |
| C1ii—N1—C1 | 110.97 (18) | O2—C5—C6 | 112.9 (3) |
| C1ii—N1—C1iii | 110.97 (18) | O2—C5—H5A | 109.0 |
| C1—N1—C1iii | 110.97 (18) | C6—C5—H5A | 109.0 |
| N1—C1—C2 | 112.3 (2) | O2—C5—H5B | 109.0 |
| N1—C1—H1A | 109.1 | C6—C5—H5B | 109.0 |
| C2—C1—H1A | 109.1 | H5A—C5—H5B | 107.8 |
| N1—C1—H1B | 109.1 | N2—C6—C5 | 112.0 (3) |
| C2—C1—H1B | 109.1 | N2—C6—H6A | 109.2 |
| H1A—C1—H1B | 107.9 | C5—C6—H6A | 109.2 |
| O1—C2—C1 | 108.6 (2) | N2—C6—H6B | 109.2 |
| O1—C2—H2A | 110.0 | C5—C6—H6B | 109.2 |
| C1—C2—H2A | 110.0 | H6A—C6—H6B | 107.9 |
| O1—C2—H2B | 110.0 | C6iii—N2—C6ii | 111.84 (19) |
| C1—C2—H2B | 110.0 | C6iii—N2—C6 | 111.84 (19) |
| H2A—C2—H2B | 108.3 | C6ii—N2—C6 | 111.84 (18) |
| C3—O1—C2 | 110.8 (2) | ||
| F1—C7—C8—F4 | 176.1 (9) | C1iii—N1—C1—C2 | 162.6 (3) |
| F2—C7—C8—F4 | 61.5 (8) | N1—C1—C2—O1 | −54.8 (3) |
| I1—C7—C8—F4 | −63.3 (8) | C1—C2—O1—C3 | −173.3 (2) |
| F1—C7—C8—F3 | −69.6 (8) | C2—O1—C3—C4 | −172.2 (2) |
| F2—C7—C8—F3 | 175.9 (7) | O1—C3—C4—O2 | 63.8 (3) |
| I1—C7—C8—F3 | 51.1 (7) | C3—C4—O2—C5 | 158.4 (2) |
| F1—C7—C8—I1i | 53.4 (8) | C4—O2—C5—C6 | 71.9 (3) |
| F2—C7—C8—I1i | −61.2 (7) | O2—C5—C6—N2 | 58.0 (3) |
| I1—C7—C8—I1i | 174.0 (2) | C5—C6—N2—C6iii | −154.9 (3) |
| C1ii—N1—C1—C2 | −73.6 (4) | C5—C6—N2—C6ii | 78.7 (4) |
| CX1 | CX2 | |
| Hole side1 | 11.634 (2) | 11.7478 (15) |
| Layer height2 | 9.6686 (18) | 9.6380 (13) |
| 4.4889 (10) | 4.5343 (7) | |
| 303.79 (7) | 312.89 (6) | |
| 2.460 (2) | 2.6650 (12) | |
| 2.692 (2) | 2.7737 (13) | |
| 2.744 (5) | 2.941 (2) | |
| 3.271 (5) | 2.985 (3) |
| CX1 | CX1 C— | CX2 | CX2 C— | |
| I2···I1—C7 | 3.4492 (5) | 175.99 (17) | 3.4492 (5) | 176.30 (16) |
| I2···I1—C8i | 3.4492 (5) | 168.30 (16) | 3.4492 (5) | 166.40 (16) |
| O1···(H3B—C3)ii | 2.63 | 147.9 | 2.60 | 147.6 |
Some parameters (Å, Å3) of the anionic layer and of the cation in the structures CX1 and CX2
| CX1 | CX2 | |
|---|---|---|
| Hole side1 | 11.634 (2) | 11.7478 (15) |
| Layer height2 | 9.6686 (18) | 9.6380 (13) |
|
| 4.4889 (10) | 4.5343 (7) |
|
| 303.79 (7) | 312.89 (6) |
|
| 2.460 (2) | 2.6650 (12) |
|
| 2.692 (2) | 2.7737 (13) |
|
| 2.744 (5) | 2.941 (2) |
|
| 3.271 (5) | 2.985 (3) |
Notes: (1) Distance between the nearest iodide anions on the same side of the anionic layer, equal to the cell parameter a; (2) distance between the planes through the iodide anions on the opposite sides of the anionic layer; (3) h = distance between the nearest planes through iodide anions of contiguous layers. (4) V = a 2 h/2, volume of the trigonal prism whose vertices are the three iodide anions on a layer and the same faced on the contiguous one.
Halogen and hydrogen bonds (Å, °) in CX1 and CX2
In CX2, the cell origin and the atom numbering are different, so that atom labels and symmetry code refer only to CX1; for CX2 the reported values refer to the equivalent atoms and values.
|
| CX1 | CX1 C— | CX2 | CX2 C— |
|---|---|---|---|---|
| I2⋯I1—C7 | 3.4492 (5) | 175.99 (17) | 3.4492 (5) | 176.30 (16) |
| I2⋯I1—C8i | 3.4492 (5) | 168.30 (16) | 3.4492 (5) | 166.40 (16) |
| O1⋯(H3 | 2.63 | 147.9 | 2.60 | 147.6 |
Symmetry codes: (i) ; (ii) .