Literature DB >> 24037660

Analysis of the complete nucleotide sequence of a white spot syndrome virus isolated from Pacific white shrimp.

Choong Yee Chai1, Jangmi Yoon, Yong Seok Lee, Young Bong Kim, Tae-Jin Choi.   

Abstract

The fourth complete genome sequence of the white spot syndrome virus (WSSV) from Pacific white shrimp (Litopenaeus vannamei) isolated from Korea (WSSV-KR) was determined. The genome is composed of 295,884 bp encompassing 515 open reading frames (ORFs) among which 90 showed no sequence homology with any known protein in BLAST searches. The remaining 425 ORFs encode functional proteins including enzymes for nucleic acid metabolism, DNA replication and transcription, and several major structural proteins. Dot plot and linear comparisons of WSSV Korean strain with other WSSV isolates showed overall similarity but with some areas of sequence difference and one large deletion area.

Entities:  

Mesh：

Substances：

Year:  2013        PMID： 24037660     DOI： 10.1007/s12275-013-3171-0

Source DB:  PubMed          Journal:  J Microbiol        ISSN： 1225-8873            Impact factor:   3.422


  11 in total

1.  The white spot syndrome virus DNA genome sequence.

Authors:  M C van Hulten; J Witteveldt; S Peters; N Kloosterboer; R Tarchini; M Fiers; H Sandbrink; R K Lankhorst; J M Vlak
Journal:  Virology       Date:  2001-07-20       Impact factor: 3.616

2.  Purification and characterization of White Spot syndrome virus (WSSV) produced in an alternate host: crayfish, Cambarus clarkii.

Authors:  C Huang; L Zhang; J Zhang; L Xiao; Q Wu; D Chen; J K Li
Journal:  Virus Res       Date:  2001-08       Impact factor: 3.303

3.  Complete genome sequence of the shrimp white spot bacilliform virus.

Authors:  F Yang; J He; X Lin; Q Li; D Pan; X Zhang; X Xu
Journal:  J Virol       Date:  2001-12       Impact factor: 5.103

4.  Identification and characterization of a shrimp white spot syndrome virus (WSSV) gene that encodes a novel chimeric polypeptide of cellular-type thymidine kinase and thymidylate kinase.

Authors:  M F Tsai; H T Yu; H F Tzeng; J H Leu; C M Chou; C J Huang; C H Wang; J Y Lin; G H Kou; C F Lo
Journal:  Virology       Date:  2000-11-10       Impact factor: 3.616

5.  Identification of a nucleocapsid protein (VP35) gene of shrimp white spot syndrome virus and characterization of the motif important for targeting VP35 to the nuclei of transfected insect cells.

Authors:  Li-Li Chen; Jiann-Horng Leu; Chang-Jen Huang; Chih-Ming Chou; Su-Mei Chen; Chung-Hsiung Wang; Chu-Fang Lo; Guang-Hsiung Kou
Journal:  Virology       Date:  2002-02-01       Impact factor: 3.616

6.  Evaluation of white spot syndrome virus variable DNA loci as molecular markers of virus spread at intermediate spatiotemporal scales.

Authors:  Bui Thi Minh Dieu; Hendrik Marks; Mark P Zwart; Just M Vlak
Journal:  J Gen Virol       Date:  2010-01-20       Impact factor: 3.891

7.  Molecular detection of three shrimp viruses and genetic variation of white spot syndrome virus in Hainan Province, China, in 2007.

Authors:  Y Tan; Y Xing; H Zhang; Y Feng; Y Zhou; Z-L Shi
Journal:  J Fish Dis       Date:  2009-05-28       Impact factor: 2.767

8.  Characterization of variable genomic regions of Indian white spot syndrome virus.

Authors:  Balakrishnan Pradeep; Malathi Shekar; Iddya Karunasagar; Indrani Karunasagar
Journal:  Virology       Date:  2008-06-20       Impact factor: 3.616

9.  An infectious viral disease of penaeid shrimp newly found in Korea.

Authors:  J H Park; Y S Lee; S Lee; Y Lee
Journal:  Dis Aquat Organ       Date:  1998-09-11       Impact factor: 1.802

10.  Transcriptional analysis of the DNA polymerase gene of shrimp white spot syndrome virus.

Authors:  Li-Li Chen; Han-Ching Wang; Chiu-Jung Huang; Shao-En Peng; Yen-Gu Chen; Shin-Jen Lin; Wei-Yu Chen; Chang-Feng Dai; Hon-Tsen Yu; Chung-Hsiung Wang; Chu-Fang Lo; Guang-Hsiung Kou
Journal:  Virology       Date:  2002-09-15       Impact factor: 3.616
View more
  7 in total

1.  Comparative genomic analysis of three white spot syndrome virus isolates of different virulence.

Authors:  Fang Li; Meiling Gao; Limei Xu; Feng Yang
Journal:  Virus Genes       Date:  2016-12-24       Impact factor: 2.332

Review 2.  Viral Shrimp Diseases Listed by the OIE: A Review.

Authors:  Dain Lee; Young-Bin Yu; Jae-Ho Choi; A-Hyun Jo; Su-Min Hong; Ju-Chan Kang; Jun-Hwan Kim
Journal:  Viruses       Date:  2022-03-12       Impact factor: 5.048

3.  Global mRNA and miRNA Analysis Reveal Key Processes in the Initial Response to Infection with WSSV in the Pacific Whiteleg Shrimp.

Authors:  Rebecca S Millard; Lisa K Bickley; Kelly S Bateman; Audrey Farbos; Diana Minardi; Karen Moore; Stuart H Ross; Grant D Stentiford; Charles R Tyler; Ronny van Aerle; Eduarda M Santos
Journal:  Viruses       Date:  2021-06-13       Impact factor: 5.048

4.  Draft Genome Sequence of White Spot Syndrome Virus Isolated from Cultured Litopenaeus vannamei in Mexico.

Authors:  Libia Zulema Rodriguez-Anaya; Jose Reyes Gonzalez-Galaviz; Ramón Casillas-Hernandez; Fernando Lares-Villa; Karel Estrada; Jose Cuauhtemoc Ibarra-Gamez; Alejandro Sanchez-Flores
Journal:  Genome Announc       Date:  2016-03-10

5.  A VP24-truncated isolate of white spot syndrome virus is inefficient in per os infection.

Authors:  Yali Han; Fang Li; Limei Xu; Feng Yang
Journal:  Vet Res       Date:  2017-12-11       Impact factor: 3.683

6.  Draft Genome Sequence of a White Spot Syndrome Virus Isolate Obtained in Ecuador.

Authors:  Leda Restrepo; Alejandro Reyes; Leandro Bajaña; Irma Betancourt; Bonny Bayot
Journal:  Genome Announc       Date:  2018-06-28

Review 7.  Molecular Mechanisms of White Spot Syndrome Virus Infection and Perspectives on Treatments.

Authors:  Bas Verbruggen; Lisa K Bickley; Ronny van Aerle; Kelly S Bateman; Grant D Stentiford; Eduarda M Santos; Charles R Tyler
Journal:  Viruses       Date:  2016-01-18       Impact factor: 5.048
  7 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.