Literature DB >> 24036122

Nickel-dependent metalloenzymes.

Jodi L Boer1, Scott B Mulrooney2, Robert P Hausinger3.   

Abstract

This review describes the functions, structures, and mechanisms of nine nickel-containing enzymes: glyoxalase I, acireductone dioxygenase, urease, superoxide dismutase, [NiFe]-hydrogenase, carbon monoxide dehydrogenase, acetyl-coenzyme A synthase/decarbonylase, methyl-coenzyme M reductase, and lactate racemase. These enzymes catalyze their various chemistries by using metallocenters of diverse structures, including mononuclear nickel, dinuclear nickel, nickel-iron heterodinuclear sites, more complex nickel-containing clusters, and nickel-tetrapyrroles. Selected other enzymes are active with nickel, but the physiological relevance of this metal specificity is unclear. Additional nickel-containing proteins of undefined function have been identified.
Copyright © 2013 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Catalytic mechanism; Enzyme; Metallocenter; Nickel; Protein structure

Mesh:

Substances:

Year:  2013        PMID: 24036122      PMCID: PMC3946514          DOI: 10.1016/j.abb.2013.09.002

Source DB:  PubMed          Journal:  Arch Biochem Biophys        ISSN: 0003-9861            Impact factor:   4.013


  129 in total

1.  Fluoride inhibition of Klebsiella aerogenes urease: mechanistic implications of a pseudo-uncompetitive, slow-binding inhibitor.

Authors:  M J Todd; R P Hausinger
Journal:  Biochemistry       Date:  2000-05-09       Impact factor: 3.162

Review 2.  Evolution in the understanding of [Fe]-hydrogenase.

Authors:  Michael J Corr; John A Murphy
Journal:  Chem Soc Rev       Date:  2011-03-01       Impact factor: 54.564

Review 3.  Nickel transport systems in microorganisms.

Authors:  T Eitinger; M A Mandrand-Berthelot
Journal:  Arch Microbiol       Date:  2000-01       Impact factor: 2.552

4.  Channeling of carbon monoxide during anaerobic carbon dioxide fixation.

Authors:  J Seravalli; S W Ragsdale
Journal:  Biochemistry       Date:  2000-02-15       Impact factor: 3.162

5.  Characterization of metal-substituted Klebsiella aerogenes urease.

Authors:  K Yamaguchi; N J Cosper; C Stålhandske; R A Scott; M A Pearson; P A Karplus; R P Hausinger
Journal:  J Biol Inorg Chem       Date:  1999-08       Impact factor: 3.358

Review 6.  A role for nickel-iron cofactors in biological carbon monoxide and carbon dioxide utilization.

Authors:  Yan Kung; Catherine L Drennan
Journal:  Curr Opin Chem Biol       Date:  2010-12-02       Impact factor: 8.822

Review 7.  Urea metabolism in plants.

Authors:  Claus-Peter Witte
Journal:  Plant Sci       Date:  2010-12-01       Impact factor: 4.729

8.  Chemistry of Ni2+ in urease: sensing, trafficking, and catalysis.

Authors:  Barbara Zambelli; Francesco Musiani; Stefano Benini; Stefano Ciurli
Journal:  Acc Chem Res       Date:  2011-05-04       Impact factor: 22.384

9.  Carbon monoxide dehydrogenase reaction mechanism: a likely case of abnormal CO2 insertion to a Ni-H(-) bond.

Authors:  Patricia Amara; Jean-Marie Mouesca; Anne Volbeda; Juan C Fontecilla-Camps
Journal:  Inorg Chem       Date:  2011-01-19       Impact factor: 5.165

10.  Diversity, function and evolution of genes coding for putative Ni-containing superoxide dismutases.

Authors:  C L Dupont; K Neupane; J Shearer; B Palenik
Journal:  Environ Microbiol       Date:  2008-04-10       Impact factor: 5.491

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  59 in total

1.  Biosynthesis of the nickel-pincer nucleotide cofactor of lactate racemase requires a CTP-dependent cyclometallase.

Authors:  Benoît Desguin; Matthias Fellner; Olivier Riant; Jian Hu; Robert P Hausinger; Pascal Hols; Patrice Soumillion
Journal:  J Biol Chem       Date:  2018-06-10       Impact factor: 5.157

2.  Structural insights into the catalytic mechanism of a sacrificial sulfur insertase of the N-type ATP pyrophosphatase family, LarE.

Authors:  Matthias Fellner; Benoît Desguin; Robert P Hausinger; Jian Hu
Journal:  Proc Natl Acad Sci U S A       Date:  2017-08-07       Impact factor: 11.205

3.  Discovery of multiple modified F(430) coenzymes in methanogens and anaerobic methanotrophic archaea suggests possible new roles for F(430) in nature.

Authors:  Kylie D Allen; Gunter Wegener; Robert H White
Journal:  Appl Environ Microbiol       Date:  2014-08-08       Impact factor: 4.792

Review 4.  Structure, function, and biosynthesis of nickel-dependent enzymes.

Authors:  Marila Alfano; Christine Cavazza
Journal:  Protein Sci       Date:  2020-02-18       Impact factor: 6.725

Review 5.  Oxygen activation by mononuclear Mn, Co, and Ni centers in biology and synthetic complexes.

Authors:  Adam T Fiedler; Anne A Fischer
Journal:  J Biol Inorg Chem       Date:  2016-11-16       Impact factor: 3.358

6.  Ynt is the primary nickel import system used by Proteus mirabilis and specifically contributes to fitness by supplying nickel for urease activity.

Authors:  Aimee L Brauer; Brian S Learman; Chelsie E Armbruster
Journal:  Mol Microbiol       Date:  2020-04-19       Impact factor: 3.501

7.  Utilization of bench-stable and readily available nickel(II) triflate for access to 1,2-cis-2-aminoglycosides.

Authors:  Eric T Sletten; Sai Kumar Ramadugu; Hien M Nguyen
Journal:  Carbohydr Res       Date:  2016-10-24       Impact factor: 2.104

8.  Reduction of urease activity by interaction with the flap covering the active site.

Authors:  Lee Macomber; Mona S Minkara; Robert P Hausinger; Kenneth M Merz
Journal:  J Chem Inf Model       Date:  2015-01-30       Impact factor: 4.956

9.  Glutamate Ligation in the Ni(II)- and Co(II)-Responsive Escherichia coli Transcriptional Regulator, RcnR.

Authors:  Carolyn E Carr; Francesco Musiani; Hsin-Ting Huang; Peter T Chivers; Stefano Ciurli; Michael J Maroney
Journal:  Inorg Chem       Date:  2017-05-18       Impact factor: 5.165

Review 10.  Carbon monoxide--physiology, detection and controlled release.

Authors:  Stefan H Heinemann; Toshinori Hoshi; Matthias Westerhausen; Alexander Schiller
Journal:  Chem Commun (Camb)       Date:  2014-04-11       Impact factor: 6.222

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