Literature DB >> 24034321

Polysome profile analysis--yeast.

Martin Pospísek1, Leos Valásek.   

Abstract

More than one 80S monosome can translate an mRNA molecule at a time producing polysomes. The most widely used method to separate 40S and 60S ribosomal subunits from 80S monosomes and polysomes is a high-velocity centrifugation of whole cell extracts in linear sucrose gradients. This polysome profile analysis technique has been routinely used to monitor translational fitness of cells under a variety of physiological conditions, to investigate functions of initiation factors involved in translation, to reveal defects in ribosome biogenesis, to determine roles of 5' UTR structures on mRNA translatability, and more recently for examination of miRNA-mediated translational repression (see an application of this protocol on Polysome analysis for determining mRNA and ribosome association in Saccharomyces cerevisiae).
© 2013 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Grow yeast cultures; Polysome profile analysis; Sucrose density gradient centrifugation; Western and Northern blotting; Yeast whole cell extracts (WCEs)

Mesh:

Substances:

Year:  2013        PMID: 24034321     DOI: 10.1016/B978-0-12-420037-1.00009-9

Source DB:  PubMed          Journal:  Methods Enzymol        ISSN: 0076-6879            Impact factor:   1.600


  14 in total

1.  AtTrm5a catalyses 1-methylguanosine and 1-methylinosine formation on tRNAs and is important for vegetative and reproductive growth in Arabidopsis thaliana.

Authors:  Xiaohuan Jin; Zhengyi Lv; Junbao Gao; Rui Zhang; Ting Zheng; Ping Yin; Dongqin Li; Liangcai Peng; Xintao Cao; Yan Qin; Staffan Persson; Bo Zheng; Peng Chen
Journal:  Nucleic Acids Res       Date:  2019-01-25       Impact factor: 16.971

2.  Gle1 Regulates RNA Binding of the DEAD-Box Helicase Ded1 in Its Complex Role in Translation Initiation.

Authors:  Peyman P Aryanpur; Chelsea A Regan; John M Collins; Telsa M Mittelmeier; David M Renner; Ashley M Vergara; Nicolette P Brown; Timothy A Bolger
Journal:  Mol Cell Biol       Date:  2017-10-13       Impact factor: 4.272

3.  Identification and characterization of a drug-sensitive strain enables puromycin-based translational assays in Saccharomyces cerevisiae.

Authors:  Gregory A Cary; Sung Hwan Yoon; Cecilia Garmendia Torres; Kathie Wang; Michelle Hays; Catherine Ludlow; David R Goodlett; Aimée M Dudley
Journal:  Yeast       Date:  2014-03-19       Impact factor: 3.239

4.  A Yeast System for Discovering Optogenetic Inhibitors of Eukaryotic Translation Initiation.

Authors:  Huixin Lu; Mostafizur Mazumder; Anna S I Jaikaran; Anil Kumar; Eric K Leis; Xiuling Xu; Michael Altmann; Alan Cochrane; G Andrew Woolley
Journal:  ACS Synth Biol       Date:  2019-04-04       Impact factor: 5.110

Review 5.  Selective footprinting of 40S and 80S ribosome subpopulations (Sel-TCP-seq) to study translation and its control.

Authors:  Susan Wagner; Jonathan Bohlen; Anna Herrmannova; Jan Jelínek; Thomas Preiss; Leoš Shivaya Valášek; Aurelio A Teleman
Journal:  Nat Protoc       Date:  2022-07-22       Impact factor: 17.021

6.  Alternative RNA splicing modulates ribosomal composition and determines the spatial phenotype of glioblastoma cells.

Authors:  Tatyana D Larionova; Soniya Bastola; Tatiana E Aksinina; Ksenia S Anufrieva; Jia Wang; Victoria O Shender; Dmitriy E Andreev; Tatiana F Kovalenko; Georgij P Arapidi; Polina V Shnaider; Anastasia N Kazakova; Yaroslav A Latyshev; Victor V Tatarskiy; Alexander A Shtil; Pascale Moreau; Francis Giraud; Chaoxi Li; Yichan Wang; Maria P Rubtsova; Olga A Dontsova; Michael Condro; Benjamin M Ellingson; Mikhail I Shakhparonov; Harley I Kornblum; Ichiro Nakano; Marat S Pavlyukov
Journal:  Nat Cell Biol       Date:  2022-10-03       Impact factor: 28.213

7.  Quantitative Comparisons of Translation Activity by Ribosome Profiling with Internal Standards.

Authors:  Yinuo J Wang; Wendy V Gilbert
Journal:  Methods Mol Biol       Date:  2021

Review 8.  Mechanism and Regulation of Protein Synthesis in Saccharomyces cerevisiae.

Authors:  Thomas E Dever; Terri Goss Kinzy; Graham D Pavitt
Journal:  Genetics       Date:  2016-05       Impact factor: 4.562

9.  RNA topoisomerase is prevalent in all domains of life and associates with polyribosomes in animals.

Authors:  Muzammil Ahmad; Yutong Xue; Seung Kyu Lee; Jennifer L Martindale; Weiping Shen; Wen Li; Sige Zou; Maria Ciaramella; Hélène Debat; Marc Nadal; Fenfei Leng; Hongliang Zhang; Quan Wang; Grace Ee-Lu Siaw; Hengyao Niu; Yves Pommier; Myriam Gorospe; Tao-Shih Hsieh; Yuk-Ching Tse-Dinh; Dongyi Xu; Weidong Wang
Journal:  Nucleic Acids Res       Date:  2016-06-01       Impact factor: 16.971

10.  Principles of cellular resource allocation revealed by condition-dependent proteome profiling.

Authors:  Eyal Metzl-Raz; Moshe Kafri; Gilad Yaakov; Ilya Soifer; Yonat Gurvich; Naama Barkai
Journal:  Elife       Date:  2017-08-31       Impact factor: 8.140

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