Literature DB >> 24034319

Method for measuring mRNA decay rate in Saccharomyces cerevisiae.

Wenqian Hu1, Jeff Coller.   

Abstract

Eukaryotic mRNA degradation is an essential aspect of gene regulation. Properly turning off transcript generation ensures that protein synthesis does not occur indefinitely. By ensuring that all mRNAs are destroyed, cells can adapt quickly to changing physiological and environmental conditions. Eukaryotic cytoplasmic mRNA degradation is predominately initiated by removal of the poly(A) tail at the 3' end (deadenylation). Following deadenylation, either the mRNA is degraded in a 3'-5' manner or the cap is removed and the mRNA is degraded 5'-3' (reviewed in Coller and Parker, 2004). Determining mRNA decay rates, as indicated by mRNA half-life, is vital to understand how mRNA stability is modulated under various physiological conditions.
© 2013 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Formaldehyde agarose denaturing gel electrophoresis; Northern transfer; Radiolabeled oligonucleotide probe; Yeast cells; mRNA decay rate; mRNA half-life calculation

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Year:  2013        PMID: 24034319     DOI: 10.1016/B978-0-12-420037-1.00007-5

Source DB:  PubMed          Journal:  Methods Enzymol        ISSN: 0076-6879            Impact factor:   1.600


  3 in total

1.  Measurement of mRNA decay rates in Saccharomyces cerevisiae using rpb1-1 strains.

Authors:  Megan Peccarelli; Bessie W Kebaara
Journal:  J Vis Exp       Date:  2014-12-13       Impact factor: 1.355

2.  Spt6 Association with RNA Polymerase II Directs mRNA Turnover During Transcription.

Authors:  Raghuvar Dronamraju; Austin J Hepperla; Yoichiro Shibata; Alexander T Adams; Terry Magnuson; Ian J Davis; Brian D Strahl
Journal:  Mol Cell       Date:  2018-06-21       Impact factor: 17.970

3.  Destabilization of Eukaryote mRNAs by 5' Proximal Stop Codons Can Occur Independently of the Nonsense-Mediated mRNA Decay Pathway.

Authors:  Barbara Gorgoni; Yun-Bo Zhao; J Krishnan; Ian Stansfield
Journal:  Cells       Date:  2019-07-31       Impact factor: 6.600

  3 in total

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