Literature DB >> 24032877

Automatic sorting of point pattern sets using Minkowski functionals.

Joshua Parker1, Eilon Sherman, Matthias van de Raa, Devaraj van der Meer, Lawrence E Samelson, Wolfgang Losert.   

Abstract

Point pattern sets arise in many different areas of physical, biological, and applied research, representing many random realizations of underlying pattern formation mechanisms. These pattern sets can be heterogeneous with respect to underlying spatial processes, which may not be visually distiguishable. This heterogeneity can be elucidated by looking at statistical measures of the patterns sets and using these measures to divide the pattern sets into distinct groups representing like spatial processes. We introduce here a numerical procedure for sorting point pattern sets into spatially homogenous groups using functional principal component analysis (FPCA) applied to the approximated Minkowski functionals of each pattern. We demonstrate that this procedure correctly sorts pattern sets into similar groups both when the patterns are drawn from similar processes and when the second-order characteristics of the pattern are identical. We highlight this routine for distinguishing the molecular patterning of fluorescently labeled cell membrane proteins, a subject of much interest in studies investigating complex spatial signaling patterns involved in the human immune response.

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Year:  2013        PMID: 24032877      PMCID: PMC6701179          DOI: 10.1103/PhysRevE.88.022720

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  8 in total

1.  Co-localization analysis of complex formation among membrane proteins by computerized fluorescence microscopy: application to immunofluorescence co-patching studies.

Authors:  E Lachmanovich; D E Shvartsman; Y Malka; C Botvin; Y I Henis; A M Weiss
Journal:  J Microsc       Date:  2003-11       Impact factor: 1.758

2.  Membrane dynamics correlate with formation of signaling clusters during cell spreading.

Authors:  King Lam Hui; Chenlu Wang; Brian Grooman; Jessica Wayt; Arpita Upadhyaya
Journal:  Biophys J       Date:  2012-04-03       Impact factor: 4.033

3.  Analysis of weighted networks.

Authors:  M E J Newman
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2004-11-24

4.  Finding community structure in very large networks.

Authors:  Aaron Clauset; M E J Newman; Cristopher Moore
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2004-12-06

5.  Morphological characterization of point patterns.

Authors:  K R Mecke; D Stoyan
Journal:  Biom J       Date:  2005-08       Impact factor: 2.207

6.  Imaging intracellular fluorescent proteins at nanometer resolution.

Authors:  Eric Betzig; George H Patterson; Rachid Sougrat; O Wolf Lindwasser; Scott Olenych; Juan S Bonifacino; Michael W Davidson; Jennifer Lippincott-Schwartz; Harald F Hess
Journal:  Science       Date:  2006-08-10       Impact factor: 47.728

7.  Functional nanoscale organization of signaling molecules downstream of the T cell antigen receptor.

Authors:  Eilon Sherman; Valarie Barr; Suliana Manley; George Patterson; Lakshmi Balagopalan; Itoro Akpan; Carole K Regan; Robert K Merrill; Connie L Sommers; Jennifer Lippincott-Schwartz; Lawrence E Samelson
Journal:  Immunity       Date:  2011-11-04       Impact factor: 31.745

8.  Low and high affinity cellular receptors for interleukin 2. Implications for the level of Tac antigen.

Authors:  R J Robb; W C Greene; C M Rusk
Journal:  J Exp Med       Date:  1984-10-01       Impact factor: 14.307

  8 in total
  3 in total

Review 1.  Characterization of Self-Assembled 2D Patterns with Voronoi Entropy.

Authors:  Edward Bormashenko; Mark Frenkel; Alla Vilk; Irina Legchenkova; Alexander A Fedorets; Nurken E Aktaev; Leonid A Dombrovsky; Michael Nosonovsky
Journal:  Entropy (Basel)       Date:  2018-12-11       Impact factor: 2.524

Review 2.  From Chaos to Ordering: New Studies in the Shannon Entropy of 2D Patterns.

Authors:  Irina Legchenkova; Mark Frenkel; Nir Shvalb; Shraga Shoval; Oleg V Gendelman; Edward Bormashenko
Journal:  Entropy (Basel)       Date:  2022-06-08       Impact factor: 2.738

3.  InterCells: A Generic Monte-Carlo Simulation of Intercellular Interfaces Captures Nanoscale Patterning at the Immune Synapse.

Authors:  Yair Neve-Oz; Julia Sajman; Yair Razvag; Eilon Sherman
Journal:  Front Immunol       Date:  2018-09-11       Impact factor: 7.561

  3 in total

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