Literature DB >> 24032863

Multiplectoneme phase of double-stranded DNA under torsion.

Marc Emanuel1, Giovanni Lanzani, Helmut Schiessel.   

Abstract

We use the wormlike chain model to study supercoiling of DNA under tension and torque. The model reproduces experimental data for a broad range of forces, salt concentrations, and contour lengths. We find a plane of first-order phase transitions ending in a smeared-out line of critical points, the multiplectoneme phase, which is characterized by a fast twist-mediated diffusion of plectonemes and a torque that rises after plectoneme formation with increasing linking number. The discovery of this phase at the same time resolves the discrepancies between existing models and experiment.

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Year:  2013        PMID: 24032863     DOI: 10.1103/PhysRevE.88.022706

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  14 in total

1.  Double-stranded RNA under force and torque: similarities to and striking differences from double-stranded DNA.

Authors:  Jan Lipfert; Gary M Skinner; Johannes M Keegstra; Toivo Hensgens; Tessa Jager; David Dulin; Mariana Köber; Zhongbo Yu; Serge P Donkers; Fang-Chieh Chou; Rhiju Das; Nynke H Dekker
Journal:  Proc Natl Acad Sci U S A       Date:  2014-10-13       Impact factor: 11.205

2.  Torque and buckling in stretched intertwined double-helix DNAs.

Authors:  Sumitabha Brahmachari; John F Marko
Journal:  Phys Rev E       Date:  2017-05-01       Impact factor: 2.529

3.  Thermodynamics of long supercoiled molecules: insights from highly efficient Monte Carlo simulations.

Authors:  Thibaut Lepage; François Képès; Ivan Junier
Journal:  Biophys J       Date:  2015-07-07       Impact factor: 4.033

4.  Coexistence of twisted, plectonemic, and melted DNA in small topological domains.

Authors:  He Meng; Johan Bosman; Thijn van der Heijden; John van Noort
Journal:  Biophys J       Date:  2014-03-04       Impact factor: 4.033

5.  Simulation of DNA Supercoil Relaxation.

Authors:  Ikenna D Ivenso; Todd D Lillian
Journal:  Biophys J       Date:  2016-05-24       Impact factor: 4.033

6.  Global force-torque phase diagram for the DNA double helix: structural transitions, triple points, and collapsed plectonemes.

Authors:  John F Marko; Sébastien Neukirch
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2013-12-27

7.  Probing the salt dependence of the torsional stiffness of DNA by multiplexed magnetic torque tweezers.

Authors:  Franziska Kriegel; Niklas Ermann; Ruaridh Forbes; David Dulin; Nynke H Dekker; Jan Lipfert
Journal:  Nucleic Acids Res       Date:  2017-06-02       Impact factor: 16.971

8.  Nucleation of Multiple Buckled Structures in Intertwined DNA Double Helices.

Authors:  Sumitabha Brahmachari; Kathryn H Gunn; Rebecca D Giuntoli; Alfonso Mondragón; John F Marko
Journal:  Phys Rev Lett       Date:  2017-10-31       Impact factor: 9.161

9.  Defect-facilitated buckling in supercoiled double-helix DNA.

Authors:  Sumitabha Brahmachari; Andrew Dittmore; Yasuharu Takagi; Keir C Neuman; John F Marko
Journal:  Phys Rev E       Date:  2018-02       Impact factor: 2.529

10.  Probing the elasticity of DNA on short length scales by modeling supercoiling under tension.

Authors:  Robert Schöpflin; Hergen Brutzer; Oliver Müller; Ralf Seidel; Gero Wedemann
Journal:  Biophys J       Date:  2012-07-17       Impact factor: 4.033

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