| Literature DB >> 24031816 |
Zhikui Hao1, Yujie Cai, Xiangru Liao, Xiaoli Zhang, Zhiyou Fang, Dabing Zhang.
Abstract
The present study reports statistical medial optimization for chitinase production by a novel bacterial strain isolated from soil recently, which the name Chitinolyticbacter meiyuanensis SYBC-H1 is proposed. A sequential statistical methodology comprising of Plackett-Burman and response surface methodology (RSM) was applied to enhance the fermentative production of chitinase, in which inulin was firstly used as an effective carbon source. As a result, maximum chitinase activity of 5.17 U/mL was obtained in the optimized medium, which was 15.5-fold higher than that in the basal medium. The triplicate verification experiments were performed under the optimized nutrients levels which indicated that it well agreed with the predicted value.Entities:
Keywords: chitinase; inulin; medium optimization; meiyuanensis SYBC-H1; response surface method
Year: 2012 PMID: 24031816 PMCID: PMC3768955 DOI: 10.1590/S1517-838220120001000019
Source DB: PubMed Journal: Braz J Microbiol ISSN: 1517-8382 Impact factor: 2.476
Variables representing medium components used in Plackett-Burman design
| Variables | Medium component | + values (g/L) | 0 values (g/L) | - values (g/L) |
|---|---|---|---|---|
| X1 | Peptone | 5.00(+) | 3.00 | 1.00(-) |
| X2 | Urea | 1.30(+) | 0.78 | 0.26(-) |
| X3 | Corn steep powder | 1.33(+) | 0.80 | 0.27(-) |
| X4 | Ammonium sulfate | 2.86(+) | 1.72 | 0.57(-) |
| X5 | Glucose | 2.00(+) | 1.20 | 0.40(-) |
| X6 | Inulin | 1.16(+) | 0.70 | 0.23(+) |
| X7 | Starch | 1.95(+) | 1.17 | 0.39(-) |
| X8 | Magnesium sulfate | 0.492(+) | 0.30 | 0.098(-) |
| X9 | Fructose | 2.00(+) | 1.20 | 0.40(-) |
| X10 | Sodium sulfate | 0.284(+) | 0.17 | 0.057(-) |
Plackett–Burman experimental design matrix with the observed response (Chitinase activity). The values showed in the table were averaged from two independent triplicate experiments with means less than 5 %.
| Variables | Chitinase (U/ml) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Run | X1 | X2 | X3 | X4 | X5 | X6 | X7 | X8 | X9 | X10 | D | |
| 1 | -1 | 1 | 1 | 1 | -1 | -1 | -1 | 1 | -1 | 1 | 1 | 0.79 |
| 2 | -1 | -1 | 1 | -1 | 1 | 1 | -1 | 1 | 1 | 1 | -1 | 0.88 |
| 3 | 1 | -1 | 1 | 1 | -1 | 1 | 1 | 1 | -1 | -1 | -1 | 0.70 |
| 4 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.93 |
| 5 | 1 | 1 | -1 | -1 | -1 | 1 | -1 | 1 | 1 | -1 | 1 | 1.26 |
| 6 | -1 | -1 | -1 | -1 | -1 | -1 | -1 | -1 | -1 | -1 | -1 | 0.75 |
| 7 | 1 | -1 | -1 | -1 | 1 | -1 | 1 | 1 | -1 | 1 | 1 | 0.41 |
| 8 | 1 | 1 | -1 | 1 | 1 | 1 | -1 | -1 | -1 | 1 | -1 | 1.27 |
| 9 | -1 | -1 | -1 | 1 | -1 | 1 | 1 | -1 | 1 | 1 | 1 | 1.32 |
| 10 | -1 | 1 | 1 | -1 | 1 | 1 | 1 | -1 | -1 | -1 | 1 | 0.72 |
| 11 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.89 |
| 12 | -1 | 1 | -1 | 1 | 1 | -1 | 1 | 1 | 1 | -1 | -1 | 0.84 |
| 13 | 1 | 1 | 1 | -1 | -1 | -1 | 1 | -1 | 1 | 1 | -1 | 1.11 |
| 14 | 1 | -1 | 1 | 1 | 1 | -1 | -1 | -1 | 1 | -1 | 1 | 0.98 |
Statistical analysis of medium components for chitinase production by Plackett–Burman design.
| Source | Medium component | Sum of squares | Coefficient estimate | Mean square | Stdized Effects | F-value | P-value Prob>F |
|---|---|---|---|---|---|---|---|
| Model | 0.89 | 0.91 | 0.089 | 204.12 | 0.0049 | ||
| X1 | Peptone | 0.009 | 0.028 | 0.009 | 0.055 | 20.74 | 0.0450 |
| X2 | Urea | 0.092 | 0.088 | 0.092 | 0.18 | 210.00 | 0.0047 |
| X3 | Corn steep liquor powder | 0.049 | -0.064 | 0.049 | -0.13 | 112.93 | 0.0087 |
| X4 | Ammonium sulfate | 0.037 | 0.056 | 0.037 | 0.11 | 85.5 | 0.0115 |
| X5 | Glucose | 0.044 | -0.061 | 0.044 | -0.12 | 101.50 | 0.0097 |
| X6 | Inulin | 0.11 | 0.098 | 0.11 | 0.20 | 260.74 | 0.0038 |
| X7 | Starch | 0.072 | -0.078 | 0.072 | -0.16 | 164.74 | 0.0060 |
| X8 | sodium sulfate | 0.16 | -0.11 | 0.16 | -0.23 | 357.50 | 0.0028 |
| X9 | Fructose | 0.29 | 0.15 | 0.29 | 0.31 | 651.90 | 0.0015 |
| X10 | Magnesium sulfate | 0.033 | 0.053 | 0.033 | 0.11 | 75.6 | 0.0130 |
Experimental design and results of the central composite design. The values showed in the table were averaged from two independent triplicate experiments with means less than 5 %.
| Variables/levels | Chitinase (U/ml) | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| Inulin | Urea | Chitin | sodium sulfate | ||||||
| Trial | Coded value | Actual value (g/L) | Coded value | Actual value (g/L) | Coded value | Actual value (g/L) | Coded value | Actual value (mM) | Experimental |
| 1 | -1 | 2 | -1 | 2 | -1 | 2 | -1 | 1 | 1.41 |
| 2 | 0 | 3 | -α | 1.59 | 0 | 3 | 0 | 2 | 3.13 |
| 3 | -1 | 2 | 1 | 4 | -1 | 2 | 1 | 3 | 1.63 |
| 4 | 1 | 4 | -1 | 2 | 1 | 4 | -1 | 1 | 2.92 |
| 5 | 0 | 3 | 0 | 3 | 0 | 3 | 0 | 2 | 4.51 |
| 6 | -1 | 2 | -1 | 2 | 1 | 4 | 1 | 3 | 3.01 |
| 7 | +α | 4.41 | 0 | 3 | 0 | 3 | 0 | 2 | 1.59 |
| 8 | 1 | 4 | 1 | 4 | -1 | 2 | 1 | 3 | 3.73 |
| 9 | 1 | 4 | -1 | 2 | -1 | 2 | 1 | 3 | 0.83 |
| 10 | -1 | 2 | -1 | 2 | 1 | 4 | -1 | 1 | 1.50 |
| 11 | 1 | 4 | 1 | 4 | 1 | 4 | 1 | 3 | 3.63 |
| 12 | 0 | 3 | 0 | 3 | -α | 1.59 | 0 | 2 | 1.35 |
| 13 | 0 | 3 | +α | 4.41 | 0 | 3 | 0 | 2 | 4.41 |
| 14 | 0 | 3 | 0 | 3 | +α | 4.41 | 0 | 2 | 4.51 |
| 15 | 0 | 3 | 0 | 3 | 0 | 3 | +α | 3.41 | 4.44 |
| 16 | -1 | 2 | 1 | 4 | 1 | 4 | -1 | 1 | 1.64 |
| 17 | -1 | 2 | 1 | 4 | -1 | 2 | -1 | 1 | 2.18 |
| 18 | -1 | 2 | -1 | 2 | -1 | 2 | 1 | 3 | 1.80 |
| 19 | 0 | 3 | 0 | 3 | 0 | 3 | 0 | 2 | 4.73 |
| 20 | 1 | 4 | 1 | 4 | -1 | 2 | -1 | 1 | 2.43 |
| 21 | -1 | 2 | 1 | 4 | 1 | 4 | 1 | 3 | 3.70 |
| 22 | -α | 1.59 | 0 | 3 | 0 | 3 | 0 | 2 | 0.91 |
| 23 | 1 | 4 | 1 | 4 | 1 | 4 | -1 | 1 | 3.11 |
| 24 | 0 | 3 | 0 | 3 | 0 | 3 | -α | 0.59 | 4.36 |
| 25 | 1 | 4 | -1 | 2 | 1 | 4 | 1 | 3 | 3.82 |
| 26 | 1 | 4 | -1 | 2 | -1 | 2 | -1 | 1 | 3.25 |
| 27 | 0 | 3 | 0 | 3 | 0 | 3 | 0 | 2 | 4.80 |
Analysis of variance (ANOVA) for the Quadratic model
| Source | df | Coefficient Estimate | Sum squares | Mean square | F ratio | Prob. level |
|---|---|---|---|---|---|---|
| model | 14 | 4.68 | 36.67 | 2.62 | 4.58 | 0.0060 |
| X1-Inulin | 1 | 0.34 | 2.80 | 2.80 | 4.89 | 0.0472 |
| X2-Urea | 1 | 0.25 | 1.54 | 1.54 | 2.70 | 0.1265 |
| X3-Chitin | 1 | 0.52 | 6.40 | 6.40 | 11.18 | 0.0059 |
| X4-sodium sulfate | 1 | 0.16 | 0.62 | 0.62 | 1.08 | 0.3191 |
| X1×X2 | 1 | 0.041 | 0.026 | 0.026 | 0.046 | 0.8338 |
| X1×X3 | 1 | 0.025 | 9.851 | 9.851 | 0.017 | 0.8978 |
| X1×X4 | 1 | -0.19 | 0.60 | 0.60 | 1.05 | 0.3251 |
| X2×X3 | 1 | -0.11 | 0.21 | 0.21 | 0.37 | 0.5547 |
| X2×X4 | 1 | 0.19 | 0.55 | 0.55 | 0.96 | 0.3469 |
| X3×X4 | 1 | 0.39 | 2.45 | 2.45 | 4.28 | 0.0607 |
| X12 | 1 | -0.95 | 19.25 | 19.25 | 33.62 | 0.0001 |
| X22 | 1 | -0.32 | 2.19 | 2.19 | 3.82 | 0.0742 |
| X32 | 1 | -0.53 | 6.01 | 6.01 | 10.05 | 0.0071 |
| X42 | 1 | -0.16 | 0.56 | 0.56 | 0.98 | 0.3427 |
| Residual | 12 | 6.87 | 0.57 | |||
| Lack of fit | 10 | 8.82 | 0.68 | 29.20 | 0.335 | |
| Total error | 2 | 0.047 | 0.023 | |||
| Corrected total | 26 | 43.54 |
Figure 1Plot of predicted vs actual chitinase activity (U/mL values)(different color represents the corresponding chitinase activity in the figure).
Figure 23D response surface curve for effects of Inulin, Urea and their mutual interaction on chitinase production by SYBC-H1. Other variables held at their zero level.
Figure 3The time-course of chitinase production by SYBC-H1 before and after the optimization (●: Original, ○: Optimum medium).
of medium composition on chitinase production
| Factors | Original | Optimum medium |
|---|---|---|
| Urea (g/L) | - | 3.10 |
| Inulin (g/L) | - | 3.55 |
| Chitin (g/L) | 1.00 | 3.80 |
| Sodium sulfate (g/L) | - | 0.64 |
| Glucose(g/L) | 1.20 | - |
| Yeast extract(g/L) | 4.00 | - |
| Mineral medium | ||
| Chitinase(U/ml) | 0.49 ± 0.2 | 5.17 ± 0.4 |
mineral medium(g/l): K2HPO4 0.7; KH2PO4; MgSO4.7H2O 0.5; FeSO4.7H2O 0.2