Literature DB >> 24031056

Creating a behavioural classification module for acceleration data: using a captive surrogate for difficult to observe species.

Hamish A Campbell1, Lianli Gao, Owen R Bidder, Jane Hunter, Craig E Franklin.   

Abstract

Distinguishing specific behavioural modes from data collected by animal-borne tri-axial accelerometers can be a time-consuming and subjective process. Data synthesis can be further inhibited when the tri-axial acceleration data cannot be paired with the corresponding behavioural mode through direct observation. Here, we explored the use of a tame surrogate (domestic dog) to build a behavioural classification module, and then used that module to accurately identify and quantify behavioural modes within acceleration collected from other individuals/species. Tri-axial acceleration data were recorded from a domestic dog whilst it was commanded to walk, run, sit, stand and lie-down. Through video synchronisation, each tri-axial acceleration sample was annotated with its associated behavioural mode; the feature vectors were extracted and used to build the classification module through the application of support vector machines (SVMs). This behavioural classification module was then used to identify and quantify the same behavioural modes in acceleration collected from a range of other species (alligator, badger, cheetah, dingo, echidna, kangaroo and wombat). Evaluation of the module performance, using a binary classification system, showed there was a high capacity (>90%) for behaviour recognition between individuals of the same species. Furthermore, a positive correlation existed between SVM capacity and the similarity of the individual's spinal length-to-height above the ground ratio (SL:SH) to that of the surrogate. The study describes how to build a behavioural classification module and highlights the value of using a surrogate for studying cryptic, rare or endangered species.

Entities:  

Keywords:  accelerometry; biotelemetry; endangered species; movement ecology; support vector machines (SVMs)

Mesh:

Year:  2013        PMID: 24031056     DOI: 10.1242/jeb.089805

Source DB:  PubMed          Journal:  J Exp Biol        ISSN: 0022-0949            Impact factor:   3.312


  15 in total

1.  Using tri-axial accelerometer loggers to identify spawning behaviours of large pelagic fish.

Authors:  Thomas M Clarke; Sasha K Whitmarsh; Jenna L Hounslow; Adrian C Gleiss; Nicholas L Payne; Charlie Huveneers
Journal:  Mov Ecol       Date:  2021-05-24       Impact factor: 3.600

2.  Animal tag technology keeps coming of age: an engineering perspective.

Authors:  Mark D Holton; Rory P Wilson; Jonas Teilmann; Ursula Siebert
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2021-06-28       Impact factor: 6.671

3.  The Use of Acceleration to Code for Animal Behaviours; A Case Study in Free-Ranging Eurasian Beavers Castor fiber.

Authors:  Patricia M Graf; Rory P Wilson; Lama Qasem; Klaus Hackländer; Frank Rosell
Journal:  PLoS One       Date:  2015-08-28       Impact factor: 3.240

4.  Optimizing acceleration-based ethograms: the use of variable-time versus fixed-time segmentation.

Authors:  Roeland A Bom; Willem Bouten; Theunis Piersma; Kees Oosterbeek; Jan A van Gils
Journal:  Mov Ecol       Date:  2014-03-28       Impact factor: 3.600

5.  Seeing It All: Evaluating Supervised Machine Learning Methods for the Classification of Diverse Otariid Behaviours.

Authors:  Monique A Ladds; Adam P Thompson; David J Slip; David P Hocking; Robert G Harcourt
Journal:  PLoS One       Date:  2016-12-21       Impact factor: 3.240

6.  Predicting Lameness in Sheep Activity Using Tri-Axial Acceleration Signals.

Authors:  Jamie Barwick; David Lamb; Robin Dobos; Derek Schneider; Mitchell Welch; Mark Trotter
Journal:  Animals (Basel)       Date:  2018-01-11       Impact factor: 2.752

7.  Development and application of a machine learning algorithm for classification of elasmobranch behaviour from accelerometry data.

Authors:  L R Brewster; J J Dale; T L Guttridge; S H Gruber; A C Hansell; M Elliott; I G Cowx; N M Whitney; A C Gleiss
Journal:  Mar Biol       Date:  2018-03-08       Impact factor: 2.573

8.  Step by step: reconstruction of terrestrial animal movement paths by dead-reckoning.

Authors:  O R Bidder; J S Walker; M W Jones; M D Holton; P Urge; D M Scantlebury; N J Marks; E A Magowan; I E Maguire; R P Wilson
Journal:  Mov Ecol       Date:  2015-09-15       Impact factor: 3.600

9.  Interpreting behaviors from accelerometry: a method combining simplicity and objectivity.

Authors:  Philip M Collins; Jonathan A Green; Victoria Warwick-Evans; Stephen Dodd; Peter J A Shaw; John P Y Arnould; Lewis G Halsey
Journal:  Ecol Evol       Date:  2015-10-02       Impact factor: 2.912

10.  Love thy neighbour: automatic animal behavioural classification of acceleration data using the K-nearest neighbour algorithm.

Authors:  Owen R Bidder; Hamish A Campbell; Agustina Gómez-Laich; Patricia Urgé; James Walker; Yuzhi Cai; Lianli Gao; Flavio Quintana; Rory P Wilson
Journal:  PLoS One       Date:  2014-02-21       Impact factor: 3.240

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