Literature DB >> 24029071

Bacteriophage T5 encodes a homolog of the eukaryotic transcription coactivator PC4 implicated in recombination-dependent DNA replication.

Birthe Steigemann1, Annina Schulz, Sebastiaan Werten.   

Abstract

The RNA polymerase II cofactor PC4 globally regulates transcription of protein-encoding genes through interactions with unwinding DNA, the basal transcription machinery and transcription activators. Here, we report the surprising identification of PC4 homologs in all sequenced representatives of the T5 family of bacteriophages, as well as in an archaeon and seven phyla of eubacteria. We have solved the crystal structure of the full-length T5 protein at 1.9Å, revealing a striking resemblance to the characteristic single-stranded DNA (ssDNA)-binding core domain of PC4. Intriguing novel structural features include a potential regulatory region at the N-terminus and a C-terminal extension of the homodimerisation interface. The genome organisation of T5-related bacteriophages points at involvement of the PC4 homolog in recombination-dependent DNA replication, strongly suggesting that the protein corresponds to the hitherto elusive replicative ssDNA-binding protein of the T5 family. Our findings imply that PC4-like factors intervene in multiple unwinding-related processes by acting as versatile modifiers of nucleic acid conformation and raise the possibility that the eukaryotic transcription coactivator derives from ancestral DNA replication, recombination and repair factors.
© 2013.

Entities:  

Keywords:  RDR; SSB; evolution; homology; protein structure; recombination-dependent DNA replication; single-stranded DNA; ssDNA; ssDNA-binding protein

Mesh:

Substances:

Year:  2013        PMID: 24029071     DOI: 10.1016/j.jmb.2013.09.001

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  9 in total

1.  Identification of the ssDNA-binding protein of bacteriophage T5: Implications for T5 replication.

Authors:  Sebastiaan Werten
Journal:  Bacteriophage       Date:  2013-12-09

2.  PC4 promotes genome stability and DNA repair through binding of ssDNA at DNA damage sites.

Authors:  O Mortusewicz; B Evers; T Helleday
Journal:  Oncogene       Date:  2015-05-11       Impact factor: 9.867

3.  The novel anti-CRISPR AcrIIA22 relieves DNA torsion in target plasmids and impairs SpyCas9 activity.

Authors:  Kevin J Forsberg; Danica T Schmidtke; Rachel Werther; Ruben V Uribe; Deanna Hausman; Morten O A Sommer; Barry L Stoddard; Brett K Kaiser; Harmit S Malik
Journal:  PLoS Biol       Date:  2021-10-13       Impact factor: 8.029

Review 4.  Sub1/PC4, a multifaceted factor: from transcription to genome stability.

Authors:  Miguel Garavís; Olga Calvo
Journal:  Curr Genet       Date:  2017-05-31       Impact factor: 3.886

5.  Substitution of tryptophan 89 with tyrosine switches the DNA binding mode of PC4.

Authors:  Jinguang Huang; Yanxiang Zhao; Huaian Liu; Dan Huang; Xiankun Cheng; Wensheng Zhao; Ian A Taylor; Junfeng Liu; You-Liang Peng
Journal:  Sci Rep       Date:  2015-03-05       Impact factor: 4.379

6.  'Drc', a structurally novel ssDNA-binding transcription regulator of N4-related bacterial viruses.

Authors:  Maarten Boon; Elke De Zitter; Jeroen De Smet; Jeroen Wagemans; Marleen Voet; Friederike L Pennemann; Thomas Schalck; Konstantin Kuznedelov; Konstantin Severinov; Luc Van Meervelt; Marc De Maeyer; Rob Lavigne
Journal:  Nucleic Acids Res       Date:  2020-01-10       Impact factor: 16.971

7.  The large family of PC4-like domains - similar folds and functions throughout all kingdoms of life.

Authors:  Robert Janowski; Dierk Niessing
Journal:  RNA Biol       Date:  2020-05-31       Impact factor: 4.652

8.  Positive Cofactor 4 (PC4) is critical for DNA repair pathway re-routing in DT40 cells.

Authors:  Randolph B Caldwell; Herbert Braselmann; Ulrike Schoetz; Steffen Heuer; Harry Scherthan; Horst Zitzelsberger
Journal:  Sci Rep       Date:  2016-07-04       Impact factor: 4.379

9.  Structural insight into the length-dependent binding of ssDNA by SP_0782 from Streptococcus pneumoniae, reveals a divergence in the DNA-binding interface of PC4-like proteins.

Authors:  Shuangli Li; Guoliang Lu; Xiang Fang; Theresa A Ramelot; Michael A Kennedy; Xin Zhou; Peng Gong; Xu Zhang; Maili Liu; Jiang Zhu; Yunhuang Yang
Journal:  Nucleic Acids Res       Date:  2020-01-10       Impact factor: 16.971

  9 in total

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