Literature DB >> 24028131

DNA overstretching transition induced by melting in a dynamical mesoscopic model.

Ana Elisa Bergues Pupo1, Fernando Falo, Alessandro Fiasconaro.   

Abstract

We present a phenomenological dynamical model describing the force induced melting as responsible for the DNA overstretching transition. The denaturation mechanism is developed under the framework of the mesoscopic one-dimensional Peyrard-Bishop-Dauxois (PBD) picture which models the melting features of a polymer chain by means of a Morse potential and the stacking interaction. We find a good agreement with both the experimental overstretching curve and the asymmetric hysteretic properties with different simulation times. The comparison of the standard PBD model with a modification of the Morse potential which takes into account the interaction with the solvent has been also successfully investigated.

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Year:  2013        PMID: 24028131     DOI: 10.1063/1.4819263

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  1 in total

1.  Equilibrium and kinetics of DNA overstretching modeled with a quartic energy landscape.

Authors:  David Argudo; Prashant K Purohit
Journal:  Biophys J       Date:  2014-11-04       Impact factor: 4.033

  1 in total

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