Literature DB >> 24026578

Conformational analysis and intramolecular hydrogen bonding of cis-3-aminoindan-1-ol: a quantum chemical study.

Djaffar Kheffache1, Hind Guemmour, Azzedine Dekhira, Ahmed Benaboura, Ourida Ouamerali.   

Abstract

In the present work, we carried out a conformational analysis of cis-3-aminoindan-1-ol and evaluated the role of the intramolecular hydrogen bond in the stabilization of various conformers using quantum mechanical DFT (B3LYP) and MP2 methods. On the basis of relative energies, we have found nine conformational minima, which can interchange through the ring-puckering and the internal rotation of the OH and NH2 groups on the five-membered ring. The intramolecular hydrogen bonds such as OH∙∙∙∙π, NH∙∙∙∙π, NH∙∙∙∙OH and HN∙∙∙∙HO are expected to be of critical importance for the conformational stabilities. The intramolecular interactions of the minima have been analyzed by calculation of electron density (ρ) and Laplacian (ρ) at the bond critical points (BCPs) using atoms-in-molecule (AIM) theory. The existence or absence of OH∙∙∙∙π and NH∙∙∙∙π in cis-3-aminoindan-1-ol remains unclear since the geometrical investigation has not been confirmed by topological criteria. The results of theoretical calculations demonstrate that this compound exists predominantly in one ring-puckering form stabilized by strong hydrogen bond HN∙∙∙∙HO Interaction.

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Year:  2013        PMID: 24026578     DOI: 10.1007/s00894-013-1989-3

Source DB:  PubMed          Journal:  J Mol Model        ISSN: 0948-5023            Impact factor:   1.810


  19 in total

1.  Intramolecular pi-type hydrogen bonding and conformations of 3-cyclopenten-1-ol. 1. Theoretical calculations.

Authors:  Abdulaziz A Al-Saadi; Esther J Ocola; Jaan Laane
Journal:  J Phys Chem A       Date:  2010-07-22       Impact factor: 2.781

2.  Conformations of 2-aminoindan in a supersonic jet: the role of intramolecular N-H...pi hydrogen bonding.

Authors:  Hiroshi Iga; Tasuku Isozaki; Tadashi Suzuki; Teijiro Ichimura
Journal:  J Phys Chem A       Date:  2007-06-16       Impact factor: 2.781

3.  Conformational landscapes and free-jet rotational spectrum of indan-1-ol.

Authors:  Biagio Velino; Paolo Ottaviani; Walther Caminati; Anna Giardini; Alessandra Paladini
Journal:  Chemphyschem       Date:  2006-03-13       Impact factor: 3.102

4.  Comparative binding energy analysis of HIV-1 protease inhibitors: incorporation of solvent effects and validation as a powerful tool in receptor-based drug design.

Authors:  C Pérez; M Pastor; A R Ortiz; F Gago
Journal:  J Med Chem       Date:  1998-03-12       Impact factor: 7.446

5.  Intramolecular OH···π interactions in alkenols and alkynols.

Authors:  Benjamin J Miller; Joseph R Lane; Henrik G Kjaergaard
Journal:  Phys Chem Chem Phys       Date:  2011-07-08       Impact factor: 3.676

6.  New 1,3-amino alcohols derived from enantiopure bridgehead β-aminobicyclo[2.2.2]oct-5-ene-2-carboxylic acids.

Authors:  Christophe André; Monique Calmès; Françoise Escale; Muriel Amblard; Jean Martinez; Olivier Songis
Journal:  Amino Acids       Date:  2011-10-04       Impact factor: 3.520

7.  DoMCoSAR: a novel approach for establishing the docking mode that is consistent with the structure-activity relationship. Application to HIV-1 protease inhibitors and VEGF receptor tyrosine kinase inhibitors.

Authors:  M Vieth; D J Cummins
Journal:  J Med Chem       Date:  2000-08-10       Impact factor: 7.446

8.  Spectroscopic and computational studies of the intramolecular hydrogen bonding of 2-indanol.

Authors:  Abdulaziz A Al-Saadi; Martin Wagner; Jaan Laane
Journal:  J Phys Chem A       Date:  2006-11-09       Impact factor: 2.781

9.  Are Bond Critical Points Really Critical for Hydrogen Bonding?

Authors:  Joseph R Lane; Julia Contreras-García; Jean-Philip Piquemal; Benjamin J Miller; Henrik G Kjaergaard
Journal:  J Chem Theory Comput       Date:  2013-07-23       Impact factor: 6.006

10.  Synthesis of cis- and trans-3-aminocyclohexanols by reduction of β-enaminoketones.

Authors:  Iris Montoya Balbás; Blanca Eda Domínguez Mendoza; Mario Fernández-Zertuche; Mario Ordoñez; Irma Linzaga-Elizalde
Journal:  Molecules       Date:  2011-12-27       Impact factor: 4.411

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