Literature DB >> 2402437

Diastereomeric dinucleoside-methylphosphonates: determination of configuration with the 2-D NMR ROESY technique.

T Löschner1, J W Engels.   

Abstract

The determination of configuration at phosphorus in diastereomeric dinucleoside-methylphosphonates having the -O-P(= O)(-CH3)-O- internucleotide linkage with the NOE derived ROESY NMR technique is described for ApT, TpT, ApA, TpA and CpG. For this purpose ROE's from the P-CH3 group to the protons in the nearest neighbourhood were measured. These ROE's are different within diastereomeric pairs of a dimer enabling us to deduce the individual configuration. The validity of the method is proven in comparison with dimers of known configuration (ApT, TpT). Together with a recently published diastereoselective synthesis method a more homogeneous picture between physical properties and the corresponding configuration is provided. There is an improvement in our knowledge about the stereochemistry of these substances which could not be deduced from the data known before.

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Year:  1990        PMID: 2402437      PMCID: PMC332127          DOI: 10.1093/nar/18.17.5083

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  14 in total

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Journal:  Nucleic Acids Res       Date:  1979-07-11       Impact factor: 16.971

3.  Solid-phase syntheses of oligodeoxyribonucleoside methylphosphonates.

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4.  Proton nuclear magnetic resonance studies on dideoxyribonucleoside methylphosphonates.

Authors:  L S Kan; D M Cheng; P S Miller; J Yano; P O Ts'o
Journal:  Biochemistry       Date:  1980-05-13       Impact factor: 3.162

5.  Molecular structure of deoxyadenylyl-3'-methylphosphonate-5'-thymidine dihydrate, (d-ApT x 2H2O), a dinucleoside monophosphate with neutral phosphodiester backbone. An X-ray crystal study.

Authors:  K K Chacko; K Lindner; W Saenger; P S Miller
Journal:  Nucleic Acids Res       Date:  1983-05-11       Impact factor: 16.971

6.  Nonionic nucleic acid analogues. Synthesis and characterization of dideoxyribonucleoside methylphosphonates.

Authors:  P S Miller; J Yano; E Yano; C Carroll; K Jayaraman; P O Ts'o
Journal:  Biochemistry       Date:  1979-11-13       Impact factor: 3.162

7.  Octa(thymidine methanephosphonates) of partially defined stereochemistry: synthesis and effect of chirality at phosphorus on binding to pentadecadeoxyriboadenylic acid.

Authors:  Z J Lesnikowski; M Jaworska; W J Stec
Journal:  Nucleic Acids Res       Date:  1990-04-25       Impact factor: 16.971

8.  Molecular structure of deoxycytidyl-3'-methylphosphonate (RP) 5'-deoxyguanidine, d[Cp(CH3)G]. A neutral dinucleotide with Watson-Crick base pairing and a right handed helical twist.

Authors:  F Han; W Watt; D J Duchamp; L Callahan; F J Kézdy; K Agarwal
Journal:  Nucleic Acids Res       Date:  1990-05-11       Impact factor: 16.971

9.  Oligodeoxyribonucleoside methylphosphonates. NMR and UV spectroscopic studies of Rp-Rp and Sp-Sp methylphosphonate (Me) modified duplexes of (d[GGAATTCC])2.

Authors:  M Bower; M F Summers; C Powell; K Shinozuka; J B Regan; G Zon; W D Wilson
Journal:  Nucleic Acids Res       Date:  1987-06-25       Impact factor: 16.971

10.  B- to Z-DNA transition probed by oligonucleotides containing methylphosphonates.

Authors:  L Callahan; F S Han; W Watt; D Duchamp; F J Kézdy; K Agarwal
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  10 in total

1.  Stabilization of triple-stranded oligonucleotide complexes: use of probes containing alternating phosphodiester and stereo-uniform cationic phosphoramidate linkages.

Authors:  S Chaturvedi; T Horn; R L Letsinger
Journal:  Nucleic Acids Res       Date:  1996-06-15       Impact factor: 16.971

2.  Synthesis of (3'-5'),(2'-5')-linked di- and tri-adenylyl methylphosphonate analogs.

Authors:  C G Wang; L X Wang; X B Yang; T Y Jiang; L H Zhang
Journal:  Nucleic Acids Res       Date:  1993-07-11       Impact factor: 16.971

3.  Synthesis and thermodynamics of oligonucleotides containing chirally pure R(P) methylphosphonate linkages.

Authors:  M A Reynolds; R I Hogrefe; J A Jaeger; D A Schwartz; T A Riley; W B Marvin; W J Daily; M M Vaghefi; T A Beck; S K Knowles; R E Klem; L J Arnold
Journal:  Nucleic Acids Res       Date:  1996-11-15       Impact factor: 16.971

4.  Preparation of trimers and tetramers of mixed sequence oligodeoxynucleoside methylphosphonates and assignment of configurations at the chiral phosphorus.

Authors:  E V Vyazovkina; J P Rife; A V Lebedev; E Wickstrom
Journal:  Nucleic Acids Res       Date:  1993-12-25       Impact factor: 16.971

5.  Synthesis of specific diastereomers of a DNA methylphosphonate heptamer, d(CpCpApApApCpA), and stability of base pairing with the normal DNA octamer d(TPGPTPTPTPGPGPC).

Authors:  E V Vyazovkina; E V Savchenko; S G Lokhov; J W Engels; E Wickstrom; A V Lebedev
Journal:  Nucleic Acids Res       Date:  1994-06-25       Impact factor: 16.971

Review 6.  DNA and RNA derivatives to optimize distribution and delivery.

Authors:  Eric Wickstrom
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7.  Oligonucleotides with novel, cationic backbone substituents: aminoethylphosphonates.

Authors:  R Fathi; Q Huang; G Coppola; W Delaney; R Teasdale; A M Krieg; A F Cook
Journal:  Nucleic Acids Res       Date:  1994-12-11       Impact factor: 16.971

8.  Interactions of oligonucleotide analogs containing methylphosphonate internucleotide linkages and 2'-O-methylribonucleosides.

Authors:  J M Kean; C D Cushman; H Kang; T E Leonard; P S Miller
Journal:  Nucleic Acids Res       Date:  1994-10-25       Impact factor: 16.971

9.  Role of a ribosomal RNA phosphate oxygen during the EF-G-triggered GTP hydrolysis.

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10.  Chemical synthesis of RNA with site-specific methylphosphonate modifications.

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Journal:  Methods       Date:  2016-03-30       Impact factor: 3.608

  10 in total

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