| Literature DB >> 24019856 |
Folarin Erogbogbo1, Jasmine May, Mark Swihart, Paras N Prasad, Katie Smart, Seif El Jack, Dariusz Korcyk, Mark Webster, Ralph Stewart, Irene Zeng, Mia Jullig, Katherine Bakeev, Michelle Jamieson, Nikolas Kasabov, Banu Gopalan, Linda Liang, Raphael Hu, Stefan Schliebs, Silas Villas-Boas, Patrick Gladding.
Abstract
Metabolomic profiling is ideally suited for the analysis of cardiac metabolism in healthy and diseased states. Here, we show that systematic discovery of biomarkers of ischemic preconditioning using metabolomics can be translated to potential nanotheranostics. Thirty-three patients underwent percutaneous coronary intervention (PCI) after myocardial infarction. Blood was sampled from catheters in the coronary sinus, aorta and femoral vein before coronary occlusion and 20 minutes after one minute of coronary occlusion. Plasma was analysed using GC-MS metabolomics and iTRAQ LC-MS/MS proteomics. Proteins and metabolites were mapped into the Metacore network database (GeneGo, MI, USA) to establish functional relevance. Expression of 13 proteins was significantly different (p<0.05) as a result of PCI. Included amongst these was CD44, a cell surface marker of reperfusion injury. Thirty-eight metabolites were identified using a targeted approach. Using PCA, 42% of their variance was accounted for by 21 metabolites. Multiple metabolic pathways and potential biomarkers of cardiac ischemia, reperfusion and preconditioning were identified. CD44, a marker of reperfusion injury, and myristic acid, a potential preconditioning agent, were incorporated into a nanotheranostic that may be useful for cardiovascular applications. Integrating biomarker discovery techniques into rationally designed nanoconstructs may lead to improvements in disease-specific diagnosis and treatment.Entities:
Keywords: cardiac ischemia; metabolomics; myocardial infarction.; silicon quantum dots; theranostics
Mesh:
Substances:
Year: 2013 PMID: 24019856 PMCID: PMC3767118 DOI: 10.7150/thno.5010
Source DB: PubMed Journal: Theranostics ISSN: 1838-7640 Impact factor: 11.556
Protein expression changes due to percutaneous coronary intervention (PCI).
| Protein Name | IPI Accession | average pre-PCI Vs post-PCI | Range of ratios | average pre-PCI Vs post-PCI | Range of ratios | ||
|---|---|---|---|---|---|---|---|
| Min | Max | Min | Max | ||||
| Thyroxine-binding globulin | IPI00292946.1 | 0.26 | 0.11 | 0.52 | 0.25 | 0.15 | 0.46 |
| Alpha-1-acid glycoprotein 2 | IPI00020091.1 | 0.37 | 0.19 | 0.94 | 0.37 | 0.15 | 0.90 |
| Complement C1r-like protein | IPI00009793.3 | 2.47 | 1.54 | 5.85 | 2.47 | 1.40 | 4.92 |
| Isoform 1 of Complement factor B | IPI00019591.1 | 1.98 | 1.24 | 3.19 | 1.98 | 1.16 | 6.98 |
| CD44 antigen | IPI00828192.1 | 5.10 | 1.79 | 14.41 | 5.10 | 1.70 | 15.18 |
| Isoform 1 of Alpha-1-antichymotrypsin | IPI00550991.3 | 0.08 | 0.03 | 0.19 | 0.08 | 0.02 | 0.23 |
| Alpha-2-antiplasmin | IPI00029863.4 | 0.24 | 0.07 | 0.92 | 0.24 | 0.05 | 0.91 |
| Kallistatin | IPI00328609.3 | 0.17 | 0.09 | 0.47 | 0.13 | 0.02 | 0.82 |
| Heparin cofactor 2 | IPI00292950.4 | 0.12 | 0.07 | 0.23 | 0.12 | 0.04 | 0.35 |
| Isoform HMW of Kininogen-1 | IPI00032328.2 | 0.06 | 0.03 | 0.13 | 0.06 | 0.02 | 0.10 |
| Apolipoprotein(a) | IPI00739995.2 | 3.70 | 2.19 | 5.52 | 3.70 | 1.77 | 5.32 |
| Apolipoprotein B-100 | IPI00022229.1 | 0.42 | 0.22 | 0.75 | 0.42 | 0.12 | 1.00 |
| Alpha-1B-glycoprotein precursor | IPI00745089.2 | 2.14 | 1.22 | 4.20 | 2.14 | 1.32 | 2.86 |
Min and max ratios (paired and crossed comparisons) for the 13 proteins that exhibited absolute consistency and changed with p<0.10 in both analyses. In bold are four decreased proteins where the highest individual post-PCI vs. pre-PCI ratio (paired or crossed) was below 0.6, and three increased proteins where the lowest post-PCI Vs pre-PCI ratio (paired or crossed) was at least 1.40.
Metabolites identified in first Principal Component (PCA1).
| Metabolite |
|---|
| aminobutyricacid |
| Methyl-2-oxopentanoic acid |
| Serine |
| Tryptophan |
| Glycine |
| Lysine |
| Isoleucine |
| Leucine |
| Hydroxybutyric acid |
| Phenylalanine |
| Valine |
| Creatinine |
| Threonine |
| Oleic acid |
| Aspartic acid |
| Glutamic acid |
| Pyroglutamic acid |
| Alanine |
| Myristic acid |
| Cysteine |
| Lactic acid |
Fig 13D score plot for coronary sinus samples at baseline and post procedure (an enlarged image is included in supporting information.)
Common 12 features seen between PCA1 and SNR ranking of coronary sinus plasma.
Fig 2Processes identified amongst key metabolites and proteins. An enlarged version of this image is available in the supporting information.
Fig 3Composite diagram containing formulation schematic, TEM, photoluminescent emission, and FTIR spectra. (a) schematic of theranostic nanoconstruct (further details of self-assembly of lipid micelles are shown in Supplementary Material: Figure S1); (b) low-resolution TEM of nanoconstructs; (c) high resolution TEM showing crystalline Si nanocrystals within the constructs (larger image is shown in Supplementary Material: Figure S2); (d) photoluminescence emission spectrum of nanoconstructs; and (e) FTIR spectra of nanoconstructs before (red) and after (blue) conjugation with hyaluronic acid.