Literature DB >> 24014406

Measurement of sirtuin enzyme activity using a substrate-agnostic fluorometric nicotinamide assay.

Basil P Hubbard1, David A Sinclair.   

Abstract

The sirtuins are NAD(+)-dependent, multifunctional lysine deacylases that play key roles in cellular homeostasis. They are increasingly being found to target a variety of substrates including acetyl-, butyryl-, malonyl-, and succinyl-lysines. Early assays for measuring sirtuin activity in vitro were criticized for their use of fluorophores on the peptide substrates used, which may alter the results obtained and not be representative of the in vivo situation. We describe a new protocol for the measurement of sirtuin activity by detecting the production of nicotinamide (NAM). The assay is amenable to any substrate and any modification removed by sirtuins. The assay may also be used to measure glycohydrolase (e.g., CD38) and ADP-ribosyltransferase activity (e.g., mARTs and PARPs).

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Year:  2013        PMID: 24014406      PMCID: PMC4727966          DOI: 10.1007/978-1-62703-637-5_11

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  37 in total

Review 1.  Poly(ADP-ribose). The most elaborate metabolite of NAD+.

Authors:  Alexander Bürkle
Journal:  FEBS J       Date:  2005-09       Impact factor: 5.542

Review 2.  The biochemistry of sirtuins.

Authors:  Anthony A Sauve; Cynthia Wolberger; Vern L Schramm; Jef D Boeke
Journal:  Annu Rev Biochem       Date:  2006       Impact factor: 23.643

3.  An enzymatic determination of ammonia in biological fluids.

Authors:  A Mondzac; G E Ehrlich; J E Seegmiller
Journal:  J Lab Clin Med       Date:  1965-09

4.  Substrate-specific activation of sirtuins by resveratrol.

Authors:  Matt Kaeberlein; Thomas McDonagh; Birgit Heltweg; Jeffrey Hixon; Eric A Westman; Seth D Caldwell; Andrew Napper; Rory Curtis; Peter S DiStefano; Stanley Fields; Antonio Bedalov; Brian K Kennedy
Journal:  J Biol Chem       Date:  2005-01-31       Impact factor: 5.157

5.  The SIR2/3/4 complex and SIR2 alone promote longevity in Saccharomyces cerevisiae by two different mechanisms.

Authors:  M Kaeberlein; M McVey; L Guarente
Journal:  Genes Dev       Date:  1999-10-01       Impact factor: 11.361

6.  Sir2 protein deacetylases: evidence for chemical intermediates and functions of a conserved histidine.

Authors:  Brian C Smith; John M Denu
Journal:  Biochemistry       Date:  2006-01-10       Impact factor: 3.162

7.  Mechanism of human SIRT1 activation by resveratrol.

Authors:  Margie T Borra; Brian C Smith; John M Denu
Journal:  J Biol Chem       Date:  2005-03-04       Impact factor: 5.157

8.  Small molecule activators of sirtuins extend Saccharomyces cerevisiae lifespan.

Authors:  Konrad T Howitz; Kevin J Bitterman; Haim Y Cohen; Dudley W Lamming; Siva Lavu; Jason G Wood; Robert E Zipkin; Phuong Chung; Anne Kisielewski; Li-Li Zhang; Brandy Scherer; David A Sinclair
Journal:  Nature       Date:  2003-08-24       Impact factor: 49.962

9.  Fluorogenic reaction and specific microdetermination of ammonia.

Authors:  K Sugawara; F Oyama
Journal:  J Biochem       Date:  1981-03       Impact factor: 3.387

10.  Mechanism of nicotinamide inhibition and transglycosidation by Sir2 histone/protein deacetylases.

Authors:  Michael D Jackson; Manning T Schmidt; Norman J Oppenheimer; John M Denu
Journal:  J Biol Chem       Date:  2003-09-30       Impact factor: 5.157

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  13 in total

1.  KDAC8 substrate specificity quantified by a biologically relevant, label-free deacetylation assay.

Authors:  Tasha B Toro; Terry J Watt
Journal:  Protein Sci       Date:  2015-10-07       Impact factor: 6.725

2.  Stem Cells and Progenitors in Human Peripheral Blood Get Activated by Extremely Active Resveratrol (XAR™).

Authors:  Vinaykumar Tripathi; Sagar Chhabria; Vaibhav Jadhav; Deepa Bhartiya; Ashish Tripathi
Journal:  Stem Cell Rev Rep       Date:  2018-04       Impact factor: 5.739

3.  Mitochondrial Sirtuin Network Reveals Dynamic SIRT3-Dependent Deacetylation in Response to Membrane Depolarization.

Authors:  Wen Yang; Koji Nagasawa; Christian Münch; Yingjie Xu; Kyle Satterstrom; Seungmin Jeong; Sebastian D Hayes; Mark P Jedrychowski; F Sejal Vyas; Elma Zaganjor; Virginia Guarani; Alison E Ringel; Steven P Gygi; J Wade Harper; Marcia C Haigis
Journal:  Cell       Date:  2016-10-27       Impact factor: 41.582

4.  Palmitic Acid-Induced NAD+ Depletion is Associated with the Reduced Function of SIRT1 and Increased Expression of BACE1 in Hippocampal Neurons.

Authors:  Manuel Flores-León; Martha Pérez-Domínguez; Rodrigo González-Barrios; Clorinda Arias
Journal:  Neurochem Res       Date:  2019-05-09       Impact factor: 3.996

5.  Molecular and Cellular Characterization of SIRT1 Allosteric Activators.

Authors:  Michael B Schultz; Conrad Rinaldi; Yuancheng Lu; João A Amorim; David A Sinclair
Journal:  Methods Mol Biol       Date:  2019

6.  Lysine Deacetylases Exhibit Distinct Changes in Activity Profiles Due to Fluorophore Conjugation of Substrates.

Authors:  Tasha B Toro; Jenae R Bryant; Terry J Watt
Journal:  Biochemistry       Date:  2017-08-16       Impact factor: 3.162

7.  Synthesis and Assay of SIRT1-Activating Compounds.

Authors:  H Dai; J L Ellis; D A Sinclair; B P Hubbard
Journal:  Methods Enzymol       Date:  2016-02-09       Impact factor: 1.600

8.  Combined Whole-Cell High-Throughput Functional Screening for Identification of New Nicotinamidases/Pyrazinamidases in Metagenomic/Polygenomic Libraries.

Authors:  Rubén Zapata-Pérez; Antonio G García-Saura; Mohamed Jebbar; Peter N Golyshin; Álvaro Sánchez-Ferrer
Journal:  Front Microbiol       Date:  2016-11-29       Impact factor: 5.640

9.  A continuous sirtuin activity assay without any coupling to enzymatic or chemical reactions.

Authors:  Sabine Schuster; Claudia Roessler; Marat Meleshin; Philipp Zimmermann; Zeljko Simic; Christian Kambach; Cordelia Schiene-Fischer; Clemens Steegborn; Michael O Hottiger; Mike Schutkowski
Journal:  Sci Rep       Date:  2016-03-04       Impact factor: 4.379

10.  Plant-derived compounds strigolactone GR24 and pinosylvin activate SIRT1 and enhance glucose uptake in rat skeletal muscle cells.

Authors:  Shalem Modi; Nagendra Yaluri; Tarja Kokkola; Markku Laakso
Journal:  Sci Rep       Date:  2017-12-14       Impact factor: 4.379

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