Literature DB >> 24008561

How bidirectional becomes unidirectional.

Patricia Richard1, James L Manley.   

Abstract

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Year:  2013        PMID： 24008561     DOI： 10.1038/nsmb.2657

Source DB:  PubMed          Journal:  Nat Struct Mol Biol        ISSN： 1545-9985            Impact factor:   15.369


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  32 in total

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Journal:  EMBO J       Date:  2003-07-15       Impact factor: 11.598

2.  Termination of cryptic unstable transcripts is directed by yeast RNA-binding proteins Nrd1 and Nab3.

Authors:  John T Arigo; Daniel E Eyler; Kristina L Carroll; Jeffry L Corden
Journal:  Mol Cell       Date:  2006-09-15       Impact factor: 17.970

3.  Transcription termination by nuclear RNA polymerases.

Authors:  Patricia Richard; James L Manley
Journal:  Genes Dev       Date:  2009-06-01       Impact factor: 11.361

4.  Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters.

Authors:  Leighton J Core; Joshua J Waterfall; John T Lis
Journal:  Science       Date:  2008-12-04       Impact factor: 47.728

5.  Molecular architecture of the human pre-mRNA 3' processing complex.

Authors:  Yongsheng Shi; Dafne Campigli Di Giammartino; Derek Taylor; Ali Sarkeshik; William J Rice; John R Yates; Joachim Frank; James L Manley
Journal:  Mol Cell       Date:  2009-02-13       Impact factor: 17.970

Review 6.  Mechanisms and consequences of alternative polyadenylation.

Authors:  Dafne Campigli Di Giammartino; Kensei Nishida; James L Manley
Journal:  Mol Cell       Date:  2011-09-16       Impact factor: 17.970

7.  Accumulation of unstable promoter-associated transcripts upon loss of the nuclear exosome subunit Rrp6p in Saccharomyces cerevisiae.

Authors:  Carrie Anne Davis; Manuel Ares
Journal:  Proc Natl Acad Sci U S A       Date:  2006-02-16       Impact factor: 11.205

8.  Bidirectional promoters generate pervasive transcription in yeast.

Authors:  Zhenyu Xu; Wu Wei; Julien Gagneur; Fabiana Perocchi; Sandra Clauder-Münster; Jurgi Camblong; Elisa Guffanti; Françoise Stutz; Wolfgang Huber; Lars M Steinmetz
Journal:  Nature       Date:  2009-01-25       Impact factor: 49.962

9.  PROMoter uPstream Transcripts share characteristics with mRNAs and are produced upstream of all three major types of mammalian promoters.

Authors:  Pascal Preker; Kristina Almvig; Marianne S Christensen; Eivind Valen; Christophe K Mapendano; Albin Sandelin; Torben Heick Jensen
Journal:  Nucleic Acids Res       Date:  2011-05-19       Impact factor: 16.971

10.  Promoter directionality is controlled by U1 snRNP and polyadenylation signals.

Authors:  Albert E Almada; Xuebing Wu; Andrea J Kriz; Christopher B Burge; Phillip A Sharp
Journal:  Nature       Date:  2013-06-23       Impact factor: 49.962
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  5 in total

1.  Systematic profiling of poly(A)+ transcripts modulated by core 3' end processing and splicing factors reveals regulatory rules of alternative cleavage and polyadenylation.

Authors:  Wencheng Li; Bei You; Mainul Hoque; Dinghai Zheng; Wenting Luo; Zhe Ji; Ji Yeon Park; Samuel I Gunderson; Auinash Kalsotra; James L Manley; Bin Tian
Journal:  PLoS Genet       Date:  2015-04-23       Impact factor: 5.917

2.  Genome-wide study of correlations between genomic features and their relationship with the regulation of gene expression.

Authors:  Yuri V Kravatsky; Vladimir R Chechetkin; Nikolai A Tchurikov; Galina I Kravatskaya
Journal:  DNA Res       Date:  2015-01-27       Impact factor: 4.458

3.  An Mtr4/ZFC3H1 complex facilitates turnover of unstable nuclear RNAs to prevent their cytoplasmic transport and global translational repression.

Authors:  Koichi Ogami; Patricia Richard; Yaqiong Chen; Mainul Hoque; Wencheng Li; James J Moresco; John R Yates; Bin Tian; James L Manley
Journal:  Genes Dev       Date:  2017-07-21       Impact factor: 11.361

4.  Asymmetric unwrapping of nucleosomes under tension directed by DNA local flexibility.

Authors:  Thuy T M Ngo; Qiucen Zhang; Ruobo Zhou; Jaya G Yodh; Taekjip Ha
Journal:  Cell       Date:  2015-03-12       Impact factor: 41.582

5.  Alternative cleavage and polyadenylation in spermatogenesis connects chromatin regulation with post-transcriptional control.

Authors:  Wencheng Li; Ji Yeon Park; Dinghai Zheng; Mainul Hoque; Ghassan Yehia; Bin Tian
Journal:  BMC Biol       Date:  2016-01-22       Impact factor: 7.431
  5 in total

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