Literature DB >> 24003220

Evaluation of cancer dependence and druggability of PRP4 kinase using cellular, biochemical, and structural approaches.

Qiang Gao1, Ingrid Mechin, Nayantara Kothari, Zhuyan Guo, Gejing Deng, Kimberly Haas, Jessica McManus, Dietmar Hoffmann, Anlai Wang, Dmitri Wiederschain, Jennifer Rocnik, Werngard Czechtizky, Xin Chen, Larry McLean, Heike Arlt, David Harper, Feng Liu, Tahir Majid, Vinod Patel, Christoph Lengauer, Carlos Garcia-Echeverria, Bailin Zhang, Hong Cheng, Marion Dorsch, Shih-Min A Huang.   

Abstract

PRP4 kinase is known for its roles in regulating pre-mRNA splicing and beyond. Therefore, a wider spectrum of PRP4 kinase substrates could be expected. The role of PRP4 kinase in cancer is also yet to be fully elucidated. Attaining specific and potent PRP4 inhibitors would greatly facilitate the study of PRP4 biological function and its validation as a credible cancer target. In this report, we verified the requirement of enzymatic activity of PRP4 in regulating cancer cell growth and identified an array of potential novel substrates through orthogonal proteomics approaches. The ensuing effort in structural biology unveiled for the first time unique features of PRP4 kinase domain and its potential mode of interaction with a low molecular weight inhibitor. These results provide new and important information for further exploration of PRP4 kinase function in cancer.

Entities:  

Keywords:  Cancer Therapy; Crystallography; Drug Discovery; Proteomics; Structural Biology

Mesh:

Substances:

Year:  2013        PMID: 24003220      PMCID: PMC3798481          DOI: 10.1074/jbc.M113.473348

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  38 in total

1.  Fission yeast Prp4p kinase regulates pre-mRNA splicing by phosphorylating a non-SR-splicing factor.

Authors:  W Schwelnus; K Richert; F Opitz; T Gross; Y Habara; T Tani; N F Käufer
Journal:  EMBO Rep       Date:  2001-01       Impact factor: 8.807

2.  Implementation of molecular replacement in AMoRe.

Authors:  J Navaza
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2001-09-21

Review 3.  The protein kinase complement of the human genome.

Authors:  G Manning; D B Whyte; R Martinez; T Hunter; S Sudarsanam
Journal:  Science       Date:  2002-12-06       Impact factor: 47.728

4.  Matthews coefficient probabilities: Improved estimates for unit cell contents of proteins, DNA, and protein-nucleic acid complex crystals.

Authors:  Katherine A Kantardjieff; Bernhard Rupp
Journal:  Protein Sci       Date:  2003-09       Impact factor: 6.725

5.  Cloning of human PRP4 reveals interaction with Clk1.

Authors:  T Kojima; T Zama; K Wada; H Onogi; M Hagiwara
Journal:  J Biol Chem       Date:  2001-06-19       Impact factor: 5.157

6.  Characterization of hPRP4 kinase activation: potential role in signaling.

Authors:  Y Huang; T Deng; B W Winston
Journal:  Biochem Biophys Res Commun       Date:  2000-05-10       Impact factor: 3.575

7.  Human immunodeficiency virus type 2 Gag interacts specifically with PRP4, a serine-threonine kinase, and inhibits phosphorylation of splicing factor SF2.

Authors:  Erin M Bennett; Andrew M L Lever; Jane F Allen
Journal:  J Virol       Date:  2004-10       Impact factor: 5.103

8.  Mammalian PRP4 kinase copurifies and interacts with components of both the U5 snRNP and the N-CoR deacetylase complexes.

Authors:  Graham Dellaire; Evgeny M Makarov; Jeff J M Cowger; Dasa Longman; Heidi G E Sutherland; Reinhard Lührmann; Joseph Torchia; Wendy A Bickmore
Journal:  Mol Cell Biol       Date:  2002-07       Impact factor: 4.272

9.  A graphical user interface to the CCP4 program suite.

Authors:  Elizabeth Potterton; Peter Briggs; Maria Turkenburg; Eleanor Dodson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2003-06-27

10.  A functional genomic analysis of cell morphology using RNA interference.

Authors:  A A Kiger; B Baum; S Jones; M R Jones; A Coulson; C Echeverri; N Perrimon
Journal:  J Biol       Date:  2003-10-01
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  14 in total

1.  On the accuracy of unit-cell parameters in protein crystallography.

Authors:  Zbigniew Dauter; Alexander Wlodawer
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2015-10-31

2.  SF1 Phosphorylation Enhances Specific Binding to U2AF65 and Reduces Binding to 3'-Splice-Site RNA.

Authors:  Rakesh Chatrikhi; Wenhua Wang; Ankit Gupta; Sarah Loerch; Alexandre Maucuer; Clara L Kielkopf
Journal:  Biophys J       Date:  2016-12-20       Impact factor: 4.033

Review 3.  A Challenging Pie to Splice: Drugging the Spliceosome.

Authors:  Brian León; Manoj K Kashyap; Warren C Chan; Kelsey A Krug; Januario E Castro; James J La Clair; Michael D Burkart
Journal:  Angew Chem Int Ed Engl       Date:  2017-08-15       Impact factor: 15.336

4.  SR protein kinases promote splicing of nonconsensus introns.

Authors:  Jesse J Lipp; Michael C Marvin; Kevan M Shokat; Christine Guthrie
Journal:  Nat Struct Mol Biol       Date:  2015-07-13       Impact factor: 15.369

5.  PRP4K is a HER2-regulated modifier of taxane sensitivity.

Authors:  Dale P Corkery; Cécile Le Page; Liliane Meunier; Diane Provencher; Anne-Marie Mes-Masson; Graham Dellaire
Journal:  Cell Cycle       Date:  2015       Impact factor: 4.534

Review 6.  Pharmacology of Modulators of Alternative Splicing.

Authors:  David O Bates; Jonathan C Morris; Sebastian Oltean; Lucy F Donaldson
Journal:  Pharmacol Rev       Date:  2017-01       Impact factor: 25.468

7.  PRPF overexpression induces drug resistance through actin cytoskeleton rearrangement and epithelial-mesenchymal transition.

Authors:  Salman Ul Islam; Adeeb Shehzad; Jong Kyung Sonn; Young Sup Lee
Journal:  Oncotarget       Date:  2017-05-15

8.  PRP4 Kinase Domain Loss Nullifies Drug Resistance and Epithelial-Mesenchymal Transition in Human Colorectal Carcinoma Cells.

Authors:  Muhammad Bilal Ahmed; Salman Ul Islam; Jong Kyung Sonn; Young Sup Lee
Journal:  Mol Cells       Date:  2020-07-31       Impact factor: 5.034

9.  Computational Drug Repositioning for Gastric Cancer using Reversal Gene Expression Profiles.

Authors:  In-Wha Kim; Jung Mi Oh; Hayoung Jang; Jae Hyun Kim; Myeong Gyu Kim; Sangsoo Kim
Journal:  Sci Rep       Date:  2019-02-25       Impact factor: 4.379

10.  PRP4 Promotes Skin Cancer by Inhibiting Production of Melanin, Blocking Influx of Extracellular Calcium, and Remodeling Cell Actin Cytoskeleton.

Authors:  Muhammad Bilal Ahmed; Salman Ul Islam; Young Sup Lee
Journal:  Int J Mol Sci       Date:  2021-06-29       Impact factor: 5.923

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