Literature DB >> 24002012

Post-translational modifications and mass spectrometry detection.

André M N Silva1, Rui Vitorino1, M Rosário M Domingues1, Corinne M Spickett2, Pedro Domingues3.   

Abstract

In this review, we provide a comprehensive bibliographic overview of the role of mass spectrometry and the recent technical developments in the detection of post-translational modifications (PTMs). We briefly describe the principles of mass spectrometry for detecting PTMs and the protein and peptide enrichment strategies for PTM analysis, including phosphorylation, acetylation and oxidation. This review presents a bibliographic overview of the scientific achievements and the recent technical development in the detection of PTMs is provided. In order to ascertain the state of the art in mass spectrometry and proteomics methodologies for the study of PTMs, we analyzed all the PTM data introduced in the Universal Protein Resource (UniProt) and the literature published in the last three years. The evolution of curated data in UniProt for proteins annotated as being post-translationally modified is also analyzed. Additionally, we have undertaken a careful analysis of the research articles published in the years 2010 to 2012 reporting the detection of PTMs in biological samples by mass spectrometry.
© 2013 Elsevier Inc. All rights reserved.

Keywords:  Literature review; Mass spectrometry; Post-translational modifications

Mesh:

Year:  2013        PMID: 24002012     DOI: 10.1016/j.freeradbiomed.2013.08.184

Source DB:  PubMed          Journal:  Free Radic Biol Med        ISSN: 0891-5849            Impact factor:   7.376


  26 in total

1.  LuciPHOr2: site localization of generic post-translational modifications from tandem mass spectrometry data.

Authors:  Damian Fermin; Dmitry Avtonomov; Hyungwon Choi; Alexey I Nesvizhskii
Journal:  Bioinformatics       Date:  2014-11-25       Impact factor: 6.937

2.  Electrostatic Interactions between OmpG Nanopore and Analyte Protein Surface Can Distinguish between Glycosylated Isoforms.

Authors:  Monifa A Fahie; Min Chen
Journal:  J Phys Chem B       Date:  2015-07-30       Impact factor: 2.991

3.  Top Down Proteomics Reveals Mature Proteoforms Expressed in Subcellular Fractions of the Echinococcus granulosus Preadult Stage.

Authors:  Karina R Lorenzatto; Kyunggon Kim; Ioanna Ntai; Gabriela P Paludo; Jeferson Camargo de Lima; Paul M Thomas; Neil L Kelleher; Henrique B Ferreira
Journal:  J Proteome Res       Date:  2015-10-28       Impact factor: 4.466

Review 4.  Recent advances in quantitative and chemical proteomics for autophagy studies.

Authors:  Yin-Kwan Wong; Jianbin Zhang; Zi-Chun Hua; Qingsong Lin; Han-Ming Shen; Jigang Wang
Journal:  Autophagy       Date:  2017-08-18       Impact factor: 16.016

Review 5.  Exploring Oxidative Reactions in Hemoglobin Variants Using Mass Spectrometry: Lessons for Engineering Oxidatively Stable Oxygen Therapeutics.

Authors:  Michael Brad Strader; Abdu I Alayash
Journal:  Antioxid Redox Signal       Date:  2016-10-20       Impact factor: 8.401

Review 6.  Proteomics in Chronic Arthritis-Will We Finally Have Useful Biomarkers?

Authors:  Christoph Kessel; Angela McArdle; Emely Verweyen; Toni Weinhage; Helmut Wittkowski; Stephen R Pennington; Dirk Foell
Journal:  Curr Rheumatol Rep       Date:  2018-07-14       Impact factor: 4.592

7.  SUMO-2 Orchestrates Chromatin Modifiers in Response to DNA Damage.

Authors:  Ivo A Hendriks; Louise W Treffers; Matty Verlaan-de Vries; Jesper V Olsen; Alfred C O Vertegaal
Journal:  Cell Rep       Date:  2015-03-12       Impact factor: 9.423

8.  Human growth hormone proteoform pattern changes in pituitary adenomas: Potential biomarkers for 3P medical approaches.

Authors:  Biao Li; Xiaowei Wang; Chenguang Yang; Siqi Wen; Jiajia Li; Na Li; Ying Long; Yun Mu; Jianping Liu; Qin Liu; Xuejun Li; Dominic M Desiderio; Xianquan Zhan
Journal:  EPMA J       Date:  2021-03-03       Impact factor: 6.543

Review 9.  Mass spectrometry-based methods for identifying oxidized proteins in disease: advances and challenges.

Authors:  Ivan Verrastro; Sabah Pasha; Karina Tveen Jensen; Andrew R Pitt; Corinne M Spickett
Journal:  Biomolecules       Date:  2015-04-14

10.  Deep proteome mapping of mouse kidney based on OFFGel prefractionation reveals remarkable protein post- translational modifications.

Authors:  Sameh Magdeldin; Keiko Yamamoto; Yutaka Yoshida; Bo Xu; Ying Zhang; Hidehiko Fujinaka; Eishin Yaoita; John R Yates; Tadashi Yamamoto
Journal:  J Proteome Res       Date:  2014-02-17       Impact factor: 4.466

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