Literature DB >> 23995916

The reverse-direction method links mass experimental data to human diseases.

Hideki Ogura1, Toru Atsumi, Hidenori Bando, Lavannya Sabharwal, Moe Yamada, Jing-Jing Jiang, Akihiro Nakamura, Yasunobu Arima, Daisuke Kamimura, Masaaki Murakami.   

Abstract

Genome-wide analyses such as DNA microarray, RNA sequencing and RNA interference-based high-throughput screening are prevalent to decipher a biological process of interest, and provide a large quantity of data to be processed. An ultimate goal for researchers must be extrapolation of their data to human diseases. We have conducted functional genome-wide screenings to elucidate molecular mechanisms of the inflammation amplifier, a NFκB/STAT3-dependent machinery that potently drives recruitment of immune cells to promote inflammation. Using a public database of genome-wide association studies (GWAS), we recently reported the reverse-direction method by which our mass screening data were successfully linked to many human diseases. As an example, the epiregulin-epidermal growth factor receptor pathway was identified as a regulator of the inflammation amplifier, and associated with human diseases by GWAS. In fact, serum epiregulin levels were higher in patients with chronic inflammatory disorders. The reverse-direction method can be a useful tool to narrow mass data down to focus on human disease-related genes.

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Year:  2013        PMID: 23995916     DOI: 10.1007/s00005-013-0255-9

Source DB:  PubMed          Journal:  Arch Immunol Ther Exp (Warsz)        ISSN: 0004-069X            Impact factor:   4.291


  1 in total

1.  Polymorphism in the EREG gene confers susceptibility to tuberculosis.

Authors:  Wen Cao; Liu-Lin Luo; Wei-Wei Chen; Li Liang; Ran-Ran Zhang; Yan-Lin Zhao; Jin Chen; Jun Yue
Journal:  BMC Med Genet       Date:  2019-01-11       Impact factor: 2.103

  1 in total

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