Literature DB >> 23992526

Deletion of the RUNX1 binding site in the erythroid cell-specific regulatory element of the ABO gene in two individuals with the Am phenotype.

Y Takahashi1, K Isa, R Sano, T Nakajima, R Kubo, K Takahashi, Y Kominato, H Tsuneyama, K Ogasawara, M Uchikawa.   

Abstract

BACKGROUND AND OBJECTIVES: An erythroid cell-specific regulatory element, referred to as the +5·8-kb site, had been identified in the first intron of the human ABO blood group gene. Subsequent studies revealed that either a 5·8-kb deletion including the +5·8-kb site or disruption of a GATA factor binding motif at the site was present in all Bm and ABm individuals examined. We investigated the molecular mechanism of the Am phenotype, which is analogous to the Bm phenotype.
MATERIALS AND METHODS: Genomic DNAs were prepared from peripheral blood of two Am individuals, and the nucleotide sequences were investigated using PCR and direct sequencing. Electrophoretic mobility shift assay (EMSA) and promoter assay with K562 cells were carried out.
RESULTS: A novel 23-bp nucleotide deletion was found at the +5·8-kb site in both individuals. EMSAs demonstrated binding of the transcription factor RUNX1 to the nucleotides within the deletion. Promoter assays showed that the deletion reduced the transcriptional activity of the +5·8-kb site.
CONCLUSION: Deletion of the 23-bp nucleotides including the RUNX1 binding site decreases transcription of the A allele, resulting in the reduction in A antigen expression in the Am phenotype.
© 2013 International Society of Blood Transfusion.

Entities:  

Keywords:  A m; ABO blood group; RUNX1; enhancer; transcription

Mesh:

Substances:

Year:  2013        PMID: 23992526     DOI: 10.1111/vox.12077

Source DB:  PubMed          Journal:  Vox Sang        ISSN: 0042-9007            Impact factor:   2.144


  5 in total

1.  Epithelial Expression of Human ABO Blood Group Genes Is Dependent upon a Downstream Regulatory Element Functioning through an Epithelial Cell-specific Transcription Factor, Elf5.

Authors:  Rie Sano; Tamiko Nakajima; Yoichiro Takahashi; Rieko Kubo; Momoko Kobayashi; Keiko Takahashi; Haruo Takeshita; Kenichi Ogasawara; Yoshihiko Kominato
Journal:  J Biol Chem       Date:  2016-09-01       Impact factor: 5.157

2.  Genetic sequencing analysis of the A307 subgroup of ABO blood group.

Authors:  Ying Huang; Jiajin Lin; Suiyong Zhu
Journal:  Int J Clin Exp Med       Date:  2015-06-15

3.  A cell-specific regulatory region of the human ABO blood group gene regulates the neighborhood gene encoding odorant binding protein 2B.

Authors:  Rie Sano; Yoichiro Takahashi; Haruki Fukuda; Megumi Harada; Akira Hayakawa; Takafumi Okawa; Rieko Kubo; Haruo Takeshita; Junichi Tsukada; Yoshihiko Kominato
Journal:  Sci Rep       Date:  2021-04-01       Impact factor: 4.379

4.  Analysis of the Genomic Sequence of ABO Allele Using Next-Generation Sequencing Method.

Authors:  Yanmin He; Xiaozhen Hong; Jingjing Zhang; Ji He; Faming Zhu; He Huang
Journal:  Front Immunol       Date:  2022-07-06       Impact factor: 8.786

5.  Genetic Sequencing Analysis of A307 Subgroup of ABO Blood Group.

Authors:  Ying Huang; Jiajin Lin; Suiyong Zhu
Journal:  Med Sci Monit       Date:  2015-09-18
  5 in total

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