Literature DB >> 23981508

Biochemical and structural characterization of a novel bacterial manganese-dependent hydroxynitrile lyase.

Ivan Hajnal1, Andrzej Lyskowski, Ulf Hanefeld, Karl Gruber, Helmut Schwab, Kerstin Steiner.   

Abstract

Hydroxynitrile lyases (HNLs), which catalyse the decomposition of cyanohydrins, are found mainly in plants. In vitro, they are able to catalyse the synthesis of enantiopure cyanohydrins, which are versatile building blocks in the chemical industry. Recently, HNLs have also been discovered in bacteria. Here, we report on the detailed biochemical and structural characterization of a hydroxynitrile lyase from Granulicella tundricola (GtHNL), which was successfully heterologously expressed in Escherichia coli. The crystal structure was solved at a crystallographic resolution of 2.5 Å and exhibits a cupin fold. As GtHNL does not show any sequence or structural similarity to any other HNL and does not contain conserved motifs typical of HNLs, cupins represent a new class of HNLs. GtHNL is metal-dependent, as confirmed by inductively coupled plasma/optical emission spectroscopy, and in the crystal structure, manganese is bound to three histidine and one glutamine residue. GtHNL displayed a specific activity of 1.74 U·mg(-1) at pH 6 with (R)-mandelonitrile, and synthesized (R)-mandelonitrile with 90% enantiomeric excess at 80% conversion using 0.5 m benzaldehyde in a biphasic reaction system with methyl tertiary butyl ether.
© 2013 FEBS.

Entities:  

Keywords:  bacterial hydroxynitrile lyase; cupin structure; enzyme catalysis; metalloenzyme; site-directed mutagenesis

Mesh:

Substances:

Year:  2013        PMID: 23981508     DOI: 10.1111/febs.12501

Source DB:  PubMed          Journal:  FEBS J        ISSN: 1742-464X            Impact factor:   5.542


  9 in total

1.  Identical active sites in hydroxynitrile lyases show opposite enantioselectivity and reveal possible ancestral mechanism.

Authors:  Bryan J Jones; Zsófia Bata; Romas J Kazlauskas
Journal:  ACS Catal       Date:  2017-05-15       Impact factor: 13.084

2.  Biochemical, Kinetic, and Spectroscopic Characterization of Ruegeria pomeroyi DddW--A Mononuclear Iron-Dependent DMSP Lyase.

Authors:  Adam E Brummett; Nicholas J Schnicker; Alexander Crider; Jonathan D Todd; Mishtu Dey
Journal:  PLoS One       Date:  2015-05-19       Impact factor: 3.240

3.  Biochemistry and Crystal Structure of Ectoine Synthase: A Metal-Containing Member of the Cupin Superfamily.

Authors:  Nils Widderich; Stefanie Kobus; Astrid Höppner; Ramona Riclea; Andreas Seubert; Jeroen S Dickschat; Johann Heider; Sander H J Smits; Erhard Bremer
Journal:  PLoS One       Date:  2016-03-17       Impact factor: 3.240

4.  Enzyme discovery beyond homology: a unique hydroxynitrile lyase in the Bet v1 superfamily.

Authors:  Elisa Lanfranchi; Tea Pavkov-Keller; Eva-Maria Koehler; Matthias Diepold; Kerstin Steiner; Barbara Darnhofer; Jürgen Hartler; Tom Van Den Bergh; Henk-Jan Joosten; Mandana Gruber-Khadjawi; Gerhard G Thallinger; Ruth Birner-Gruenberger; Karl Gruber; Margit Winkler; Anton Glieder
Journal:  Sci Rep       Date:  2017-05-03       Impact factor: 4.379

5.  Hydroxynitrile lyases from cyanogenic millipedes: molecular cloning, heterologous expression, and whole-cell biocatalysis for the production of (R)-mandelonitrile.

Authors:  Takuya Yamaguchi; Aem Nuylert; Atsutoshi Ina; Tsutomu Tanabe; Yasuhisa Asano
Journal:  Sci Rep       Date:  2018-02-14       Impact factor: 4.379

6.  Illuminating the catalytic core of ectoine synthase through structural and biochemical analysis.

Authors:  Laura Czech; Astrid Höppner; Stefanie Kobus; Andreas Seubert; Ramona Riclea; Jeroen S Dickschat; Johann Heider; Sander H J Smits; Erhard Bremer
Journal:  Sci Rep       Date:  2019-01-23       Impact factor: 4.379

Review 7.  Progress in Stereoselective Construction of C-C Bonds Enabled by Aldolases and Hydroxynitrile Lyases.

Authors:  Mi Liu; Dan Wei; Zexing Wen; Jian-Bo Wang
Journal:  Front Bioeng Biotechnol       Date:  2021-04-21

8.  Discovery of a novel (R)-selective bacterial hydroxynitrile lyase from Acidobacterium capsulatum.

Authors:  Romana Wiedner; Mandana Gruber-Khadjawi; Helmut Schwab; Kerstin Steiner
Journal:  Comput Struct Biotechnol J       Date:  2014-07-08       Impact factor: 7.271

9.  R-hydroxynitrile lyase from the cyanogenic millipede, Chamberlinius hualienensis-A new entry to the carrier protein family Lipocalines.

Authors:  Fumihiro Motojima; Atsushi Izumi; Aem Nuylert; Zhenyu Zhai; Mohammad Dadashipour; Sayaka Shichida; Takuya Yamaguchi; Shogo Nakano; Yasuhisa Asano
Journal:  FEBS J       Date:  2020-08-13       Impact factor: 5.542

  9 in total

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