Literature DB >> 23977902

Two-dimensional fluorescence lifetime correlation spectroscopy. 2. Application.

Kunihiko Ishii1, Tahei Tahara.   

Abstract

In the preceding article, we introduced the theoretical framework of two-dimensional fluorescence lifetime correlation spectroscopy (2D FLCS). In this article, we report the experimental implementation of 2D FLCS. In this method, two-dimensional emission-delay correlation maps are constructed from the photon data obtained with the time-correlated single photon counting (TCSPC), and then they are converted to 2D lifetime correlation maps by the inverse Laplace transform. We develop a numerical method to realize reliable transformation, employing the maximum entropy method (MEM). We apply the developed actual 2D FLCS to two real systems, a dye mixture and a DNA hairpin. For the dye mixture, we show that 2D FLCS is experimentally feasible and that it can identify different species in an inhomogeneous sample without any prior knowledge. The application to the DNA hairpin demonstrates that 2D FLCS can disclose microsecond spontaneous dynamics of biological molecules in a visually comprehensible manner, through identifying species as unique lifetime distributions. A FRET pair is attached to the both ends of the DNA hairpin, and the different structures of the DNA hairpin are distinguished as different fluorescence lifetimes in 2D FLCS. By constructing the 2D correlation maps of the fluorescence lifetime of the FRET donor, the equilibrium dynamics between the open and the closed forms of the DNA hairpin is clearly observed as the appearance of the cross peaks between the corresponding fluorescence lifetimes. This equilibrium dynamics of the DNA hairpin is clearly separated from the acceptor-missing DNA that appears as an isolated diagonal peak in the 2D maps. The present study clearly shows that newly developed 2D FLCS can disclose spontaneous structural dynamics of biological molecules with microsecond time resolution.

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Year:  2013        PMID: 23977902     DOI: 10.1021/jp406864e

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  10 in total

1.  Microsecond and millisecond dynamics in the photosynthetic protein LHCSR1 observed by single-molecule correlation spectroscopy.

Authors:  Toru Kondo; Jesse B Gordon; Alberta Pinnola; Luca Dall'Osto; Roberto Bassi; Gabriela S Schlau-Cohen
Journal:  Proc Natl Acad Sci U S A       Date:  2019-05-17       Impact factor: 11.205

2.  Fast and robust two-dimensional inverse Laplace transformation of single-molecule fluorescence lifetime data.

Authors:  Saurabh Talele; John T King
Journal:  Biophys J       Date:  2021-08-28       Impact factor: 3.699

3.  Identification of distinct pH- and zeaxanthin-dependent quenching in LHCSR3 from Chlamydomonas reinhardtii.

Authors:  Julianne M Troiano; Federico Perozeni; Raymundo Moya; Luca Zuliani; Kwangyrul Baek; EonSeon Jin; Stefano Cazzaniga; Matteo Ballottari; Gabriela S Schlau-Cohen
Journal:  Elife       Date:  2021-01-15       Impact factor: 8.140

4.  Microsecond protein dynamics observed at the single-molecule level.

Authors:  Takuhiro Otosu; Kunihiko Ishii; Tahei Tahara
Journal:  Nat Commun       Date:  2015-07-07       Impact factor: 14.919

Review 5.  Two-Dimensional Fluorescence Lifetime Correlation Spectroscopy: Concepts and Applications.

Authors:  Takuhiro Otosu; Shoichi Yamaguchi
Journal:  Molecules       Date:  2018-11-14       Impact factor: 4.411

6.  Chaperones Skp and SurA dynamically expand unfolded OmpX and synergistically disassemble oligomeric aggregates.

Authors:  Neharika Chamachi; Andreas Hartmann; Mai Quynh Ma; Anna Svirina; Georg Krainer; Michael Schlierf
Journal:  Proc Natl Acad Sci U S A       Date:  2022-03-01       Impact factor: 11.205

7.  Identification and quantification of within-burst dynamics in singly labeled single-molecule fluorescence lifetime experiments.

Authors:  Paul David Harris; Eitan Lerner
Journal:  Biophys Rep (N Y)       Date:  2022-08-17

8.  Membrane-dependent heterogeneity of LHCII characterized using single-molecule spectroscopy.

Authors:  Premashis Manna; Thomas Davies; Madeline Hoffmann; Matthew P Johnson; Gabriela S Schlau-Cohen
Journal:  Biophys J       Date:  2021-06-30       Impact factor: 3.699

9.  Small molecule regulated dynamic structural changes of human G-quadruplexes.

Authors:  Manish Debnath; Shirsendu Ghosh; Deepanjan Panda; Irene Bessi; Harald Schwalbe; Kankan Bhattacharyya; Jyotirmayee Dash
Journal:  Chem Sci       Date:  2016-02-12       Impact factor: 9.825

10.  Resolving fluorescent species by their brightness and diffusion using correlated photon-counting histograms.

Authors:  Nathan Scales; Peter S Swain
Journal:  PLoS One       Date:  2019-12-30       Impact factor: 3.240

  10 in total

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