Literature DB >> 23974275

Detection and quantification of chimerism by droplet digital PCR.

David George1, Juliann Czech, Bobby John, Min Yu, Lawrence J Jennings.   

Abstract

Accurate quantification of chimerism and microchimerism is proving to be increasingly valuable for hematopoietic cell transplantation as well as non-transplant conditions. However, methods that are available to quantify low-level chimerism lack accuracy. Therefore, we developed and validated a method for quantifying chimerism based on digital PCR technology. We demonstrate accurate quantification that far exceeds what is possible with analog qPCR down to 0.01% with the potential to go even lower. Also, this method is inherently more informative than qPCR. We expect the advantages of digital PCR will make it the preferred method for chimerism analysis.

Keywords:  PCR; chimerism; digital; informative loci; limit of detection; microchimerism; quantitative

Mesh:

Substances:

Year:  2013        PMID: 23974275      PMCID: PMC3782543          DOI: 10.4161/chim.25400

Source DB:  PubMed          Journal:  Chimerism        ISSN: 1938-1964


  28 in total

Review 1.  Quantitative analysis of chimerism after allogeneic stem cell transplantation by PCR amplification of microsatellite markers and capillary electrophoresis with fluorescence detection: the Geneva experience.

Authors:  Y Chalandon; S Vischer; C Helg; B Chapuis; E Roosnek
Journal:  Leukemia       Date:  2003-01       Impact factor: 11.528

Review 2.  Quantitative analysis of chimerism after allogeneic stem cell transplantation by PCR amplification of microsatellite markers and capillary electrophoresis with fluorescence detection: the Vienna experience.

Authors:  E Schraml; H Daxberger; F Watzinger; T Lion
Journal:  Leukemia       Date:  2003-01       Impact factor: 11.528

Review 3.  Quantitative analysis of chimerism after allogeneic stem cell transplantation by PCR amplification of microsatellite markers and capillary electrophoresis with fluorescence detection: the Frankfurt experience.

Authors:  U Koehl; O Beck; R Esser; E Seifried; T Klingebiel; D Schwabe; C Seidl
Journal:  Leukemia       Date:  2003-01       Impact factor: 11.528

4.  Fetal microchimerism in skin wound healing.

Authors:  Dany Nassar; Kiarash Khosrotehrani; Selim Aractingi
Journal:  Chimerism       Date:  2012-04-01

5.  Evaluation of the sensitivity of two recently developed STR multiplexes for the analysis of chimerism after haematopoietic stem cell transplantation.

Authors:  A Odriozola; J A Riancho; M Colorado; M T Zarrabeitia
Journal:  Int J Immunogenet       Date:  2012-05-18       Impact factor: 1.466

6.  Quantitative assessment of hematopoietic chimerism after bone marrow transplantation by real-time quantitative polymerase chain reaction.

Authors:  Mehdi Alizadeh; Marc Bernard; Bruno Danic; Charly Dauriac; Brigitte Birebent; Christine Lapart; Thierry Lamy; Pierre-Yves Le Prisé; Alain Beauplet; Dominique Bories; Gilbert Semana; Erwann Quelvennec
Journal:  Blood       Date:  2002-06-15       Impact factor: 22.113

7.  The EuroChimerism concept for a standardized approach to chimerism analysis after allogeneic stem cell transplantation.

Authors:  T Lion; F Watzinger; S Preuner; H Kreyenberg; M Tilanus; R de Weger; J van Loon; L de Vries; H Cavé; C Acquaviva; M Lawler; M Crampe; A Serra; B Saglio; F Colnaghi; A Biondi; J J M van Dongen; M van der Burg; M Gonzalez; M Alcoceba; G Barbany; M Hermanson; E Roosnek; C Steward; J Harvey; F Frommlet; P Bader
Journal:  Leukemia       Date:  2012-03-07       Impact factor: 11.528

8.  Microchimerism and rejection: a meta-analysis.

Authors:  A Sahota; S Gao; J Hayes; R M Jindal
Journal:  Clin Transplant       Date:  2000-08       Impact factor: 2.863

9.  Quantitative chimerism kinetics in relapsed leukemia patients after allogeneic hematopoietic stem cell transplantation.

Authors:  Xiao-Ying Qin; Guo-Xuan Li; Ya-Zhen Qin; Yu Wang; Feng-Rong Wang; Dai-Hong Liu; Lan-Ping Xu; Huan Chen; Wei Han; Jing-Zhi Wang; Xiao-Hui Zhang; Jin-Lan Li; Ling-di Li; Kai-Yan Liu; Xiao-Jun Huang
Journal:  Chin Med J (Engl)       Date:  2012-06       Impact factor: 2.628

10.  Microchimerism and survival after breast and colon cancer diagnosis.

Authors:  Mads Kamper-Jørgensen
Journal:  Chimerism       Date:  2012-07-01
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  12 in total

1.  Analysis of maternal microchimerism in rhesus monkeys (Macaca mulatta) using real-time quantitative PCR amplification of MHC polymorphisms.

Authors:  Sonia Bakkour; Chris A R Baker; Alice F Tarantal; Li Wen; Michael P Busch; Tzong-Hae Lee; Joseph M McCune
Journal:  Chimerism       Date:  2014-01-17

2.  An ultrasensitive test for profiling circulating tumor DNA using integrated comprehensive droplet digital detection.

Authors:  Chen-Yin Ou; Tam Vu; Jonathan T Grunwald; Michael Toledano; Jan Zimak; Melody Toosky; Byron Shen; Jason A Zell; Enrico Gratton; Timothy J Abram; Weian Zhao
Journal:  Lab Chip       Date:  2019-03-13       Impact factor: 6.799

3.  A Child's HLA-DRB1 genotype increases maternal risk of systemic lupus erythematosus.

Authors:  Giovanna I Cruz; Xiaorong Shao; Hong Quach; Kimberly A Ho; Kirsten Sterba; Janelle A Noble; Nikolaos A Patsopoulos; Michael P Busch; Darrell J Triulzi; Wendy S W Wong; Benjamin D Solomon; John E Niederhuber; Lindsey A Criswell; Lisa F Barcellos
Journal:  J Autoimmun       Date:  2016-07-04       Impact factor: 7.094

Review 4.  A practical guide to chimerism analysis: Review of the literature and testing practices worldwide.

Authors:  Amanda G Blouin; Fei Ye; Jenifer Williams; Medhat Askar
Journal:  Hum Immunol       Date:  2021-08-14       Impact factor: 2.211

5.  Comparison of single nucleotide polymorphisms and short tandem repeats as markers for differentiating between donors and recipients in solid organ transplantation.

Authors:  Hyun-Ji Lee; Kyoung-Hwa Shin; Su Jeong Jeong; In Suk Kim
Journal:  Korean J Transplant       Date:  2021-02-24

Review 6.  Chimerism analysis for clinicians: a review of the literature and worldwide practices.

Authors:  Amanda G Blouin; Medhat Askar
Journal:  Bone Marrow Transplant       Date:  2022-01-26       Impact factor: 5.174

Review 7.  Digital PCR: A Reliable Tool for Analyzing and Monitoring Hematologic Malignancies.

Authors:  Nicoletta Coccaro; Giuseppina Tota; Luisa Anelli; Antonella Zagaria; Giorgina Specchia; Francesco Albano
Journal:  Int J Mol Sci       Date:  2020-04-29       Impact factor: 5.923

8.  Detection of Human Microchimerism following Allogeneic Cell Transplantation Using Droplet Digital PCR.

Authors:  Catherine A Lombard; Alexandre Fabre; Jérôme Ambroise; Joachim Ravau; Floriane André; Nawal Jazouli; Mustapha Najimi; Xavier Stéphenne; Françoise Smets; Jean-Luc Vaerman; Etienne M Sokal
Journal:  Stem Cells Int       Date:  2019-06-12       Impact factor: 5.443

9.  Digital PCR Panel for Sensitive Hematopoietic Chimerism Quantification after Allogeneic Stem Cell Transplantation.

Authors:  Tanja Stahl; Caroline Rothe; Manja U Böhme; Aloisa Kohl; Nicolaus Kröger; Boris Fehse
Journal:  Int J Mol Sci       Date:  2016-09-09       Impact factor: 5.923

10.  Systematic comparison of donor chimerism in peripheral blood and bone marrow after hematopoietic stem cell transplantation.

Authors:  C Bach; M Steffen; W Roesler; J Winkler; A Mackensen; K-D Stachel; M Metzler; B M Spriewald
Journal:  Blood Cancer J       Date:  2017-06-02       Impact factor: 11.037

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