| Literature DB >> 23974240 |
Sebastian Böcker1, Stephan Wagner.
Abstract
We present an algorithm for counting glycan topologies of order n that improves on previously described algorithms by a factor n in both time and space. More generally, we provide such an algorithm for counting rooted or unrooted d-ary trees with labels or masses assigned to the vertices, and we give a "recipe" to estimate the asymptotic growth of the resulting sequences. We provide constants for the asymptotic growth of d-ary trees and labeled quaternary trees (glycan topologies). Finally, we show how a classical result from enumeration theory can be used to count glycan structures where edges are labeled by bond types. Our method also improves time bounds for counting alkanes.Entities:
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Year: 2013 PMID: 23974240 DOI: 10.1007/s00285-013-0721-3
Source DB: PubMed Journal: J Math Biol ISSN: 0303-6812 Impact factor: 2.259