| Literature DB >> 23967230 |
Lyudmila Kh Pastushkova1, Kirill S Kireev, Alexey S Kononikhin, Evgeny S Tiys, Igor A Popov, Natalia L Starodubtseva, Igor V Dobrokhotov, Vladimir A Ivanisenko, Irina M Larina, Nicolay A Kolchanov, Evgeny N Nikolaev.
Abstract
The urine protein composition samples of ten Russian cosmonauts (male, aged of 35 up to 51) performed long flight missions and varied from 169 up to 199 days on the International Space Station (ISS) were analyzed. As a control group, urine samples of six back-up cosmonauts were analyzed. We used proteomic techniques to obtain data and contemporary bioinformatics approaches to perform the analysis. From the total number of identified proteins (238) in our data set, 129 were associated with a known tissue origin. Preflight samples contained 92 tissue-specific proteins, samples obtained on Day 1 after landing had 90 such proteins, while Day 7 samples offered 95 tissue-specific proteins. Analysis showed that consistently present proteins in urine (under physiological conditions and after space flight) are cubilin, epidermal growth factor, kallikrein-1, kininogen-1, megalin, osteopontin, vitamin K-dependent protein Z, uromodulin. Variably present proteins consists of: Na(+)/K(+) ATPase subunit gamma, β-defensin-1, dipeptidyl peptidase 4, maltasa-glucoamilasa, cadherin-like protein, neutral endopeptidase and vascular cell adhesion protein 1. And only three renal proteins were related to the space flight factors. They were not found in the pre-flight samples and in the back-up cosmonaut urine, but were found in the urine samples after space flight: AFAM (afamin), AMPE (aminopeptidase A) and AQP2 (aquaporin-2). This data related with physiological readaptation of water-salt balance. The proteomic analysis of urine samples in different phases of space missions with bioinformation approach to protein identification provides new data relative to biomechemical mechanism of kidney functioning after space flight.Entities:
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Year: 2013 PMID: 23967230 PMCID: PMC3742504 DOI: 10.1371/journal.pone.0071652
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Figure 1Distribution of specific tissue proteins.
The number of proteins for each tissue accordingly to the TiGER database. Preflight condition is a condition of cosmonauts before the flight. The first day after flight is a landing day, and the seventh day after flight is a week after the landing. There are numbers of proteins form the united proteome of 10 cosmonauts.
Figure 2The portion of proteins presented in urine according to the number of EST.
N_i is a number of proteins from TiGER database with i level of EST. n_i is a number of urine proteins with i level of EST, i is an interval of EST values. EST values serve as a rough estimation of gene expression.
Renal proteins in the prime and back-up cosmonauts’ urine before and after space flight.
| Renal tissue proteins | Back-up cosmonauts (n = 6) | Prime cosmonauts (n = 10) | |||
| Before flight | 190–240 after | Before flight | 1st day after landing | 7th day after landing | |
| CUBN, cubilin | present | present | present | present | present |
| EGF, epidermal growth factor | present | present | present | present | present |
| KLK1, kallikrein-1 | present | present | present | present | present |
| KNG1, kininogen-1 | present | present | present | present | present |
| LRP2, megalin | present | present | present | present | present |
| OSTP, osteopontin | present | present | present | present | preset |
| PROZ, vitamin K-dependent protein Z | present | present | present | present | present |
| UROM, uromodulin | present | present | present | present | present |
| ATNG, Na(+)/K(+) ATPase subunit gamma | absent | present | absent | absent | absent |
| BD01, β-defensin-1 | absent | absent | present | present | present |
| DPP4, dipeptidyl peptidase 4 | absent | present | present | absent | present |
| MGA, maltasa-glucoamilasa | absent | absent | present | present | absent |
| MUCDL, cadherin-like protein | absent | absent | present | absent | absent |
| NEP, neutral endopeptidase | absent | absent | present | absent | absent |
| VCAM1, vascular cell adhesion protein 1 | absent | absent | present | present | present |
| AFAM, afamin | absent | absent | absent |
| absent |
| AMPE, aminopeptidase A | absent | absent | absent | absent |
|
| AQP2, aquaporin-2 | absent | absent | absent |
| absent |
Peptides identified for the pos-flight proteins.
| Number of detections | Protein | Peptides | Score | Mass accurace, ppm |
| 1 | Aquaporin2 | SLAPAVVTGK | 29 | −0.13 |
| GLEPDTDWEER | 67 | 0.79 | ||
| 2 | Aminopeptidase A | ETNLLYDPK | 41 | −0.51 |
| ASLIDDAFALAR | 64 | 0.07 | ||
| TSDFWAALEEASR | 75 | 0.73 | ||
| TQDVFTVIR | 56 | −1.51 | ||
| ANPSQPPSDLGYTWNIPVK | 44 | 1.58 | ||
| TSLAQEK | 18 | −2.85 | ||
| 2 | Afamin | SDVGFLPPFPTLDPEEK | 36 | 1.21 |
| HELTDEELQSLFTNFANVVDK | 59 | −0.48 | ||
| IAPQLSTEELVSLGEK | 80 | 0.27 | ||
| FLVNLVK | 44 | −0.23 | ||
| HFQNLGK | 25 | 2.22 | ||
| LPNNVLQEK | 27 | 1.52 |
Figure 3MSMS data for two peptides of aquaporin 2.
Microalbuminuria (mg/day) during Space Mission.
| Astronaut 1 | Astronaut 2 | Astronaut 3 | Astronaut 4 | |
| Urinary albumin on Earth | 3.24 | 6.13 | 4.47 | 3.90 |
| Urinary albumin in space | 2.54 | 4.18 | 3.01 | 3.90 |
| Mean excretion on Earth | 4.70±1.20 | |||
| Mean excretion in space | 3.41±0.56(−27,4%), P<0.017 |
Data from Cirillo et al. (28).