| Literature DB >> 23958065 |
G N K Mahardika1, N Dibia2, N S Budayanti3, N M Susilawathi4, K Subrata5, A E Darwinata3, F S Wignall6, J A Richt7, W A Valdivia-Granda8, A A R Sudewi4.
Abstract
SUMMARY: The emergence of human and animal rabies in Bali since November 2008 has attracted local, national and international interest. The potential origin and time of introduction of rabies virus to Bali is described. The nucleoprotein (N) gene of rabies virus from dog brain and human clinical specimens was sequenced using an automated DNA sequencer. Phylogenetic inference with Bayesian Markov Chain Monte Carlo (MCMC) analysis using the Bayesian Evolutionary Analysis by Sampling Trees (BEAST) v. 1.7.5 software confirmed that the outbreak of rabies in Bali was caused by an Indonesian lineage virus following a single introduction. The ancestor of Bali viruses was the descendant of a virus from Kalimantan. Contact tracing showed that the event most likely occurred in early 2008. The introduction of rabies into a large unvaccinated dog population in Bali clearly demonstrates the risk of disease transmission for government agencies and should lead to an increased preparedness and efforts for sustained risk reduction to prevent such events from occurring in future.Entities:
Mesh:
Year: 2013 PMID: 23958065 PMCID: PMC4045169 DOI: 10.1017/S0950268813002021
Source DB: PubMed Journal: Epidemiol Infect ISSN: 0950-2688 Impact factor: 2.451
List of secondary sequence data used in this study for phylogeographical analysis
| Country and origin area | ID number | Year of isolation | Accession number | Ref. |
|---|---|---|---|---|
| Indonesia, Sumatra | 03003INDO | 2003 | EU086192 | [ |
| SN0014 | 2000 | AB154235 | [ | |
| SC02-90 | 2002 | AB154243 | ||
| SS01-21 | 2001 | AB154238 | ||
| SC01-70 | 2001 | AB154242 | ||
| SN00-03 | 2000 | AB154234 | ||
| SC97-01 | 1997 | AB154233 | ||
| SS01-13 | 2001 | AB154237 | ||
| SC00-12 | 2000 | AB154225 | ||
| SC00-45 | 2000 | AB154227 | ||
| SC00-36 | 2000 | AB154226 | ||
| SC01-63 | 2001 | AB154228 | ||
| SC02-89 | 2002 | AB154231 | ||
| SC02-83 | 2002 | AB154230 | ||
| SC02-91 | 2002 | AB154232 | ||
| SC02-79 | 2002 | AB154229 | ||
| SC01-66 | 2001 | AB154213 | ||
| SC01-65 | 2001 | AB154214 | ||
| SC02-87 | 2002 | AB154224 | ||
| SC01-74 | 2001 | AB154209 | ||
| SC01-68 | 2001 | AB154208 | ||
| SC01-75 | 2001 | AB154210 | ||
| SC02-82 | 2002 | AB154211 | ||
| SC01-73 | 2001 | AB154212 | ||
| SN00-14 | 2000 | AB154235 | ||
| SC02-90 | 2002 | AB154243 | ||
| SS01-21 | 2001 | AB154238 | ||
| Indonesia, Kalimantan | KL97-03 | 1997 | AB154223 | [ |
| KL00-18 | 2000 | AB154221 | ||
| Indonesia, Sulawesi | SW97-04 | 1997 | AB154241 | [ |
| SW02-22 | 2002 | AB154240 | ||
| SW01-11 | 2001 | AB154239 | ||
| Indonesia, Flores | FL01-06 | 2001 | AB154215 | [ |
| FL01-08 | 2001 | AB154216 | ||
| FL01-27 | 2003 | AB154222 | ||
| Fl02-10 | 2002 | AB154217 | ||
| FL97-01 | 1997 | AB154218 | ||
| Indonesia, West Java | JA97-05 | 1997 | AB154220 | [ |
| China | Guizhou_Qx5 | 2003 | DQ666296 | [ |
| Thailand | 8738THA | n.a. | U22653 | [ |
| Sri Lanka | 1294 | 1986 | AY238549 | [ |
| Canada | 91RABN2756 | n.a. | L20674 | [ |
| Russia | 9141RUS | 1988 | U22656 | [ |
| Mexico | 9126MEX | 1991 | U22477 | [ |
| Namibia | 9227NAM | 1992 | U22649 | [ |
| Poland | 8618POL | n.a. | U22840 | [ |
| Philippines | Phi152-14 | n.a. | AB070772 | [ |
n.a., Not available.
Fig. 1.The maximum clade credibility phylogeny for nucleoprotein gene fragment of rabies virus from the outbreak in Bali in 2009–2010 analysed with sequence data of some viruses from other islands in Indonesia and from some countries that are available in GenBank. The name of the island and the isolate code is presented for rabies viruses from Indonesia. The letters ‘H’ and ‘D’ for viruses from Bali represent human and dog viruses, respectively. Phylogeny was inferred in the Bayesian MCMC analysis using BEAST software. The posterior probability values are shown next to respective node.
Cases of unreported deaths with clinical signs of rabies and history of dog bite as well as the bite incidences in the sub-district Kuta Selatan, Badung district, Bali, Indonesia from June 2008 to 30 November 2008 when the rabies outbreak was formally declared
| January–April 2008 | Estimated arrival of rabies virus in Bali |
| July 2008 | Victim TA bitten in Ungasan |
| August 2008 | Dog bite incident in Ungasan; patient healthy |
| 6 September 2008 | Victim L (female, 4 years) bitten in Ungasan |
| 9 September 2008 | Victim MA (male, 32 years) bitten |
| 16 September 2008 | Index case KW (male, 28 years) bitten in Ungasan |
| 17 September 2008 | Victim L died |
| 19 October 2008 | Patient MORP (male, 3 years) bitten in Ungasan |
| 14 November 2008 | Victim MA died |
| 21 November 2008 | Victim MORP died |
| 23 November 2008 | Index case KW died |
| 26 November 2008 | Bite incident in Kedonganan. The dog died and was positive by FAT |
| 30 November 2008 | Rabies outbreak formally declared in Bali |
| 16 January 2009 | Victim TA died |