| Literature DB >> 23957953 |
Piya Lahiry1, Lemuel Racacho, Jian Wang, John F Robinson, Gregory B Gloor, C Anthony Rupar, Victoria M Siu, Dennis E Bulman, Robert A Hegele.
Abstract
BACKGROUND: To elucidate the genetic basis of a novel neurodegenerative disorder in an Old Order Amish pedigree by combining homozygosity mapping with exome sequencing. METHODS ANDEntities:
Mesh:
Substances:
Year: 2013 PMID: 23957953 PMCID: PMC3765793 DOI: 10.1186/1750-1172-8-126
Source DB: PubMed Journal: Orphanet J Rare Dis ISSN: 1750-1172 Impact factor: 4.123
Figure 1Old Order Amish pedigree with consanguinity (indicated by the double lines) has four individuals with ARCA, a disease with an autosomal-recessive mode of inheritance. Affected individuals are shown as blackened squares (male) and circles (female). Diagonal lines across symbols indicate deceased individuals.
Clinical description of the four ARCA-affected individuals
| | | ||||
|---|---|---|---|---|---|
| | 46, XX | 46, XX | 46, XY | 46, XY | |
| | Uncomplicated | Uncomplicated | Uncomplicated | Clomid-induced but uncomplicated | |
| | 36.5 weeks | 38 weeks | 39 weeks | 39 weeks | |
| | 2455 g (10th percentile) | 2610 g (10th percentile) | N/A | 2550 g (<3rd percentile) | |
| | 47.5 cm (25th percentile) | N/A | N/A | N/A | |
| | 30 cm (<3rd percentile) | N/A | N/A | N/A | |
| | at 6.5 mo: Anterior open (N), posterior closed (N) | at 2 mo: Anterior closed (abN) | at 5.5 mo: Anterior closed (abN) | at 8 mo: Anterior fontanelle closed | |
| | died at 18 months | died at 2 years | alive at 12 yrs | alive at 14 yrs | |
| | - | + | - | - | |
| Suckling | stopped by 6 weeks | stopped by 5 mo | N/A | N/A | |
| Smile | started at 2 mo, stopped by 7 mo | Started at 2 mo, stopped by 3 mo | no reflexive smile at 1 mo | Started at 2 mo, stopped by 4 mo | |
| Sitting | unable at 7 mo | unable at 8 mo | unable at 4 yrs | unable at 5 yrs | |
| Babbling | unable at 7 mo | unable at 8 mo | no speech at 4 yr | N/A | |
| Seizures/Epilepsy | - | + | + | + | |
| | EEG | N/A | marked abnormality with low cortical activity, no epileptiform activity noted | generalized central epileptiform activity | Grade 1 generalized and suppressed cerebral activity |
| | Spasticity | + (fisted hands, legs scissoring) | + (legs scissoring, arms stiff) | + (myoclonic spasm due to sound/light touch, fisted hands) | + (clonus of R ankle) |
| | Reflexes | N/A | brisk, clonus of L ankle | unable to assess | hyperreflexia |
| | Tone | hypotonic trunk, hypertonic extremities | Hypotonic lower extremities | hypotonic trunk, hypertonic extremities | hypertonic extremities |
| | Irritable | ++ | ++ | +++ | +++ |
| | Head circumference, last recorded | 36.5 cm @ 6.5 mo (<3rd percentile) | 35.5 cm @ 2 yrs (<3rd percentile) | 43.3 cm @ 4 yrs (<3rd percentile) | 39 cm at 8.5 mo (<3rd percentile) |
| | Akathisia | + | + | ++ (while awake) | ++ |
| | Startles | easily | easily | easily however less pronounced presently | easily however less pronounced presently |
| Visual impairment | inconsistent with cues | infrequent, strabismus | cortical, horizontal + vertical nystagmus | cortical visual impairment, eyes roll back | |
| Fundoscopy | N/A | N/A | mild atrophic fundi | hypoplastic optic nerve and fovea | |
| Hearing | Normal | normal | normal | normal | |
| G-tube | - | at 1 yr | at 4 yrs due to recurrent aspiration pneumonitis | - | |
| | Elevated ammonia, Mn, lactate, platelets | | Elevated Mn, lactate, and platelets | Elevated CK, CK-MB, and platelets | |
| Age at time of imaging | 10 mo | 8 mo, 11 mo, | 3 mo, 12 mo | 7 mo, 13 mo, 6 yrs 7 mo | |
| Description | Severe symmetrical cerebral volume loss, gray and white matter affected, thinned corpus callosum. Cerebellum, brainstem, midbrain and supratentorial deep grey matter are unaffected. | Enlarged lateral and 3rd ventricles, severe uniform atrophy of the brain with subcortical white matter loss. Normal spine to T2, cerebellum and pons. | Marked progressive cerebral and cerebellar atrophy with basal ganglia involvement | Prominent ventricles, thin white and grey matter | |
| Age at time of imaging | 6 mo | | 3 mo | | |
| Description | Prominent subarachnoid spaces and ventricular system. Infratentorial compartment is normal, including cerebellum and 4th ventricle | Generalized cerebral atrophy with associated ventriculomegaly, difficult to differentiate between grey/white matter | |||
* Based on: Barbier et al, 2013. Pediatrics. “New Reference curves for Head Circumference at Birth, by GA”. Abbreviations: N/A, not available; "-", not determined.
Figure 2Coronal and sagittal views of T1-weighted MRI-head of ARCA patients demonstrating diffuse cortical atrophy and ventriculomegaly. A) V-10 at 8 months of age, B) V-14 at 10 months of age.
Figure 3Genetic investigations to find the causative mutation for ARCA. A) Variant filtration of exome sequencing data of two affected individuals, V-10 and V-12. Non-synonymous is defined as a change that alters the amino acid. B) Homozygosity mapping narrows candidate region to 11q23.3, containing 91 genes.
Figure 4The genomic structure of gene consists of 13 coding exons with a nucleotide change in exon 10 (indicated in red) that alters threonine to methionine at residue 332 (T332M). DNA sequence tracings of TMPRSS4 exon 10 in an ARCA affected (top), T332M heterozygote (middle), and an unaffected (bottom) individual. For each tracing, the nucleotide sequence is shown at the top followed by the single-letter amino acid code and codon numbers beneath.
Figure 5TMPRSS4 protein structure and amino acid sequence alignment with its orthologs. A) A schematic representation of TMPRSS4 protein domain structure. At the N-terminal the protein has a transmembrane domain, a LDL-receptor A domain, and a scavenger receptor domain. The C-terminal encodes for the trypsin-like serine protease domain which contains the catalytic triad amino acids (histidine, aspartic acid, serine). The T332 residue (indicated with a red star) is also found within this domain. B) Multiple alignments (using ClustalW) demonstrate that T332 residue (highlighted in red) is highly conserved across a representative set of species-specific TMPRSS4 orthologs.