Literature DB >> 23954876

Pike and salmon as sister taxa: detailed intraclade resolution and divergence time estimation of Esociformes + Salmoniformes based on whole mitochondrial genome sequences.

Matthew A Campbell1, J Andrés López, Tetsuya Sado, Masaki Miya.   

Abstract

The increasing number of taxa and loci in molecular phylogenetic studies of basal euteleosts has brought stability in a controversial area. A key emerging aspect to these studies is a sister Esociformes (pike) and Salmoniformes (salmon) relationship. We evaluate mitochondrial genome support for a sister Esociformes and Salmoniformes hypothesis by surveying many potential outgroups for these taxa, employing multiple phylogenetic approaches, and utilizing a thorough sampling scheme. Secondly, we conduct a simultaneous divergence time estimation and phylogenetic inference in a Bayesian framework with fossil calibrations focusing on relationships within Esociformes+Salmoniformes. Our dataset supports a sister relationship between Esociformes and Salmoniformes; however the nearest relatives of Esociformes+Salmoniformes are inconsistent among analyses. Within the order Esociformes, we advocate for a single family, Esocidae. Subfamily relationships within Salmonidae are poorly supported as Salmoninae sister to Thymallinae+Coregoninae.
© 2013 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  CAT-GTR; DNA; Dirichlet process mixture of profiles of equilibrium frequencies combined with general exchange rates; Divergence time estimation; ESS; Esociformes; GTR; HKY; HPD; Hasegawa, Kishino, and Yano model of nucleotide evolution; I; MCMC; ML; MRA; Ma; Markov chain Monte Carlo; Mitogenomics; NADH-ubiquinone oxidoreductase chain 6; ND6; PCR; Phylogenetics; RNA; RY; Salmoniformes; TE; deoxyribonucleic acid; effective sample size; four-category gamma distributed rate variation among sites; general time reversible model of nucleotide evolution; highest posterior density; maximum likelihood; million years ago; most recent common ancestor; n; nucleotide; polymerase chain reaction; proportion of invariant sites; purine and pyrimidine recoding; rRNA; ribonucleic acid; ribosomal RNA; tRNA; transfer RNA; tris(hydroxymethyl)aminomethane-ethylenediaminetetraacetic acid; Γ

Mesh:

Substances:

Year:  2013        PMID: 23954876     DOI: 10.1016/j.gene.2013.07.068

Source DB:  PubMed          Journal:  Gene        ISSN: 0378-1119            Impact factor:   3.688


  16 in total

1.  Molecular Phylogeny and Adaptive Mitochondrial DNA Evolution of Salmonids (Pisces: Salmonidae).

Authors:  Ying Wang; Fei Xiong; Zhaobin Song
Journal:  Front Genet       Date:  2022-06-17       Impact factor: 4.772

2.  The rise and fall of the ancient northern pike master sex-determining gene.

Authors:  Qiaowei Pan; Romain Feron; Elodie Jouanno; Hugo Darras; Amaury Herpin; Ben Koop; Eric Rondeau; Frederick W Goetz; Wesley A Larson; Louis Bernatchez; Mike Tringali; Stephen S Curran; Eric Saillant; Gael Pj Denys; Frank A von Hippel; Songlin Chen; J Andrés López; Hugo Verreycken; Konrad Ocalewicz; Rene Guyomard; Camille Eche; Jerome Lluch; Celine Roques; Hongxia Hu; Roger Tabor; Patrick DeHaan; Krista M Nichols; Laurent Journot; Hugues Parrinello; Christophe Klopp; Elena A Interesova; Vladimir Trifonov; Manfred Schartl; John Postlethwait; Yann Guiguen
Journal:  Elife       Date:  2021-01-28       Impact factor: 8.140

3.  Beringian sub-refugia revealed in blackfish (Dallia): implications for understanding the effects of Pleistocene glaciations on Beringian taxa and other Arctic aquatic fauna.

Authors:  Matthew A Campbell; Naoki Takebayashi; J Andrés López
Journal:  BMC Evol Biol       Date:  2015-07-19       Impact factor: 3.260

4.  A well-constrained estimate for the timing of the salmonid whole genome duplication reveals major decoupling from species diversification.

Authors:  Daniel J Macqueen; Ian A Johnston
Journal:  Proc Biol Sci       Date:  2014-01-22       Impact factor: 5.349

5.  The genome and linkage map of the northern pike (Esox lucius): conserved synteny revealed between the salmonid sister group and the Neoteleostei.

Authors:  Eric B Rondeau; David R Minkley; Jong S Leong; Amber M Messmer; Johanna R Jantzen; Kristian R von Schalburg; Craig Lemon; Nathan H Bird; Ben F Koop
Journal:  PLoS One       Date:  2014-07-28       Impact factor: 3.240

6.  Revisiting the mitogenomic phylogeny of Salmoninae: new insights thanks to recent sequencing advances.

Authors:  Jose L Horreo
Journal:  PeerJ       Date:  2017-09-18       Impact factor: 2.984

7.  Phylogeography and taxonomic status of trout and salmon from the Ponto-Caspian drainages, with inferences on European Brown Trout evolution and taxonomy.

Authors:  Levan Ninua; David Tarkhnishvili; Elguja Gvazava
Journal:  Ecol Evol       Date:  2018-02-05       Impact factor: 2.912

8.  Lineage-specific rediploidization is a mechanism to explain time-lags between genome duplication and evolutionary diversification.

Authors:  Fiona M Robertson; Manu Kumar Gundappa; Fabian Grammes; Torgeir R Hvidsten; Anthony K Redmond; Sigbjørn Lien; Samuel A M Martin; Peter W H Holland; Simen R Sandve; Daniel J Macqueen
Journal:  Genome Biol       Date:  2017-06-14       Impact factor: 13.583

9.  Early-branching euteleost relationships: areas of congruence between concatenation and coalescent model inferences.

Authors:  Matthew A Campbell; Michael E Alfaro; Max Belasco; J Andrés López
Journal:  PeerJ       Date:  2017-09-08       Impact factor: 2.984

10.  Preservation Obscures Pelagic Deep-Sea Fish Diversity: Doubling the Number of Sole-Bearing Opisthoproctids and Resurrection of the Genus Monacoa (Opisthoproctidae, Argentiniformes).

Authors:  Jan Yde Poulsen; Tetsuya Sado; Christoph Hahn; Ingvar Byrkjedal; Masatoshi Moku; Masaki Miya
Journal:  PLoS One       Date:  2016-08-10       Impact factor: 3.240

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.