Literature DB >> 23954311

Classifying temporal relations in clinical data: a hybrid, knowledge-rich approach.

Jennifer D'Souza1, Vincent Ng2.   

Abstract

We address the TLINK track of the 2012 i2b2 challenge on temporal relations. Unlike other approaches to this task, we (1) employ sophisticated linguistic knowledge derived from semantic and discourse relations, rather than focus on morpho-syntactic knowledge; and (2) leverage a novel combination of rule-based and learning-based approaches, rather than rely solely on one or the other. Experiments show that our knowledge-rich, hybrid approach yields an F-score of 69.3, which is the best result reported to date on this dataset.
Copyright © 2013 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Discourse relations; Hybrid approaches; Semantic relations; Temporal relations

Mesh:

Year:  2013        PMID: 23954311      PMCID: PMC3855590          DOI: 10.1016/j.jbi.2013.08.003

Source DB:  PubMed          Journal:  J Biomed Inform        ISSN: 1532-0464            Impact factor:   6.317


  6 in total

1.  An end-to-end system to identify temporal relation in discharge summaries: 2012 i2b2 challenge.

Authors:  Yan Xu; Yining Wang; Tianren Liu; Junichi Tsujii; Eric I-Chao Chang
Journal:  J Am Med Inform Assoc       Date:  2013-03-06       Impact factor: 4.497

Review 2.  Evaluating temporal relations in clinical text: 2012 i2b2 Challenge.

Authors:  Weiyi Sun; Anna Rumshisky; Ozlem Uzuner
Journal:  J Am Med Inform Assoc       Date:  2013-04-05       Impact factor: 4.497

3.  Exploring the boundaries: gene and protein identification in biomedical text.

Authors:  Jenny Finkel; Shipra Dingare; Christopher D Manning; Malvina Nissim; Beatrice Alex; Claire Grover
Journal:  BMC Bioinformatics       Date:  2005-05-24       Impact factor: 3.169

4.  Identifying gene and protein mentions in text using conditional random fields.

Authors:  Ryan McDonald; Fernando Pereira
Journal:  BMC Bioinformatics       Date:  2005-05-24       Impact factor: 3.169

5.  Recognition of protein/gene names from text using an ensemble of classifiers.

Authors:  GuoDong Zhou; Dan Shen; Jie Zhang; Jian Su; SoonHeng Tan
Journal:  BMC Bioinformatics       Date:  2005-05-24       Impact factor: 3.169

6.  A la Recherche du Temps Perdu: extracting temporal relations from medical text in the 2012 i2b2 NLP challenge.

Authors:  Colin Cherry; Xiaodan Zhu; Joel Martin; Berry de Bruijn
Journal:  J Am Med Inform Assoc       Date:  2013-03-23       Impact factor: 4.497

  6 in total
  8 in total

1.  Chronology of your health events: approaches to extracting temporal relations from medical narratives.

Authors:  Özlem Uzuner; Amber Stubbs; Weiyi Sun
Journal:  J Biomed Inform       Date:  2013-12       Impact factor: 6.317

2.  Normalization of relative and incomplete temporal expressions in clinical narratives.

Authors:  Weiyi Sun; Anna Rumshisky; Ozlem Uzuner
Journal:  J Am Med Inform Assoc       Date:  2015-04-12       Impact factor: 4.497

3.  Semantic Role Labeling of Clinical Text: Comparing Syntactic Parsers and Features.

Authors:  Yaoyun Zhang; Min Jiang; Jingqi Wang; Hua Xu
Journal:  AMIA Annu Symp Proc       Date:  2017-02-10

Review 4.  Temporal reasoning over clinical text: the state of the art.

Authors:  Weiyi Sun; Anna Rumshisky; Ozlem Uzuner
Journal:  J Am Med Inform Assoc       Date:  2013-05-15       Impact factor: 4.497

5.  An automatic system to identify heart disease risk factors in clinical texts over time.

Authors:  Qingcai Chen; Haodi Li; Buzhou Tang; Xiaolong Wang; Xin Liu; Zengjian Liu; Shu Liu; Weida Wang; Qiwen Deng; Suisong Zhu; Yangxin Chen; Jingfeng Wang
Journal:  J Biomed Inform       Date:  2015-09-08       Impact factor: 6.317

Review 6.  Evaluating temporal relations in clinical text: 2012 i2b2 Challenge.

Authors:  Weiyi Sun; Anna Rumshisky; Ozlem Uzuner
Journal:  J Am Med Inform Assoc       Date:  2013-04-05       Impact factor: 4.497

Review 7.  Temporal data representation, normalization, extraction, and reasoning: A review from clinical domain.

Authors:  Mohcine Madkour; Driss Benhaddou; Cui Tao
Journal:  Comput Methods Programs Biomed       Date:  2016-02-23       Impact factor: 5.428

8.  The Revival of the Notes Field: Leveraging the Unstructured Content in Electronic Health Records.

Authors:  Michela Assale; Linda Greta Dui; Andrea Cina; Andrea Seveso; Federico Cabitza
Journal:  Front Med (Lausanne)       Date:  2019-04-17
  8 in total

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