Literature DB >> 23952448

Extrinsic noise driven phenotype switching in a self-regulating gene.

Michael Assaf1, Elijah Roberts, Zaida Luthey-Schulten, Nigel Goldenfeld.   

Abstract

Analysis of complex gene regulation networks gives rise to a landscape of metastable phenotypic states for cells. Heterogeneity within a population arises due to infrequent noise-driven transitions of individual cells between nearby metastable states. While most previous works have focused on the role of intrinsic fluctuations in driving such transitions, in this Letter we investigate the role of extrinsic fluctuations. First, we develop an analytical framework to study the combined effect of intrinsic and extrinsic noise on a toy model of a Boolean regulated genetic switch. We then extend these ideas to a more biologically relevant model with a Hill-like regulatory function. Employing our theory and Monte Carlo simulations, we show that extrinsic noise can significantly alter the lifetimes of the phenotypic states and may fundamentally change the escape mechanism. Finally, our theory can be readily generalized to more complex decision making networks in biology.

Mesh:

Year:  2013        PMID: 23952448     DOI: 10.1103/PhysRevLett.111.058102

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  18 in total

1.  Effects of DNA replication on mRNA noise.

Authors:  Joseph R Peterson; John A Cole; Jingyi Fei; Taekjip Ha; Zaida A Luthey-Schulten
Journal:  Proc Natl Acad Sci U S A       Date:  2015-12-15       Impact factor: 11.205

2.  Careful accounting of extrinsic noise in protein expression reveals correlations among its sources.

Authors:  John A Cole; Zaida Luthey-Schulten
Journal:  Phys Rev E       Date:  2017-06-27       Impact factor: 2.529

3.  Eco-evolutionary dynamics of a population with randomly switching carrying capacity.

Authors:  Karl Wienand; Erwin Frey; Mauro Mobilia
Journal:  J R Soc Interface       Date:  2018-08       Impact factor: 4.118

4.  Evolutionary Phase Transitions in Random Environments.

Authors:  Antun Skanata; Edo Kussell
Journal:  Phys Rev Lett       Date:  2016-07-15       Impact factor: 9.161

5.  Whole Cell Modeling: From Single Cells to Colonies.

Authors:  John A Cole; Zaida Luthey-Schulten
Journal:  Isr J Chem       Date:  2014-07-31       Impact factor: 3.333

6.  Modelling bistable tumour population dynamics to design effective treatment strategies.

Authors:  Andrei R Akhmetzhanov; Jong Wook Kim; Ryan Sullivan; Robert A Beckman; Pablo Tamayo; Chen-Hsiang Yeang
Journal:  J Theor Biol       Date:  2019-05-09       Impact factor: 2.405

7.  The Switch in a Genetic Toggle System with Lévy Noise.

Authors:  Yong Xu; Yongge Li; Hao Zhang; Xiaofan Li; Jürgen Kurths
Journal:  Sci Rep       Date:  2016-08-19       Impact factor: 4.379

8.  Distinguishing cell phenotype using cell epigenotype.

Authors:  Thomas P Wytock; Adilson E Motter
Journal:  Sci Adv       Date:  2020-03-18       Impact factor: 14.957

9.  Global genetic response in a cancer cell: self-organized coherent expression dynamics.

Authors:  Masa Tsuchiya; Midori Hashimoto; Yoshiko Takenaka; Ikuko N Motoike; Kenichi Yoshikawa
Journal:  PLoS One       Date:  2014-05-15       Impact factor: 3.240

10.  Gene switching rate determines response to extrinsic perturbations in the self-activation transcriptional network motif.

Authors:  Sebastiano de Franciscis; Giulio Caravagna; Giancarlo Mauri; Alberto d'Onofrio
Journal:  Sci Rep       Date:  2016-06-03       Impact factor: 4.379

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