Literature DB >> 23949415

Two new high-resolution crystal structures of carboxysome pentamer proteins reveal high structural conservation of CcmL orthologs among distantly related cyanobacterial species.

Markus Sutter1, Steven C Wilson, Samuel Deutsch, Cheryl A Kerfeld.   

Abstract

Cyanobacteria have evolved a unique carbon fixation organelle known as the carboxysome that compartmentalizes the enzymes RuBisCO and carbonic anhydrase. This effectively increases the local CO2 concentration at the active site of RuBisCO and decreases its relatively unproductive side reaction with oxygen. Carboxysomes consist of a protein shell composed of hexameric and pentameric proteins arranged in icosahedral symmetry. Facets composed of hexameric proteins are connected at the vertices by pentameric proteins. Structurally homologous pentamers and hexamers are also found in heterotrophic bacteria where they form architecturally related microcompartments such as the Eut and Pdu organelles for the metabolism of ethanolamine and propanediol, respectively. Here we describe two new high-resolution structures of the pentameric shell protein CcmL from the cyanobacteria Thermosynechococcus elongatus and Gloeobacter violaceus and provide detailed analysis of their characteristics and comparison with related shell proteins.

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Year:  2013        PMID: 23949415     DOI: 10.1007/s11120-013-9909-z

Source DB:  PubMed          Journal:  Photosynth Res        ISSN: 0166-8595            Impact factor:   3.573


  32 in total

1.  Electrostatics of nanosystems: application to microtubules and the ribosome.

Authors:  N A Baker; D Sept; S Joseph; M J Holst; J A McCammon
Journal:  Proc Natl Acad Sci U S A       Date:  2001-08-21       Impact factor: 11.205

2.  Parallel on-chip gene synthesis and application to optimization of protein expression.

Authors:  Jiayuan Quan; Ishtiaq Saaem; Nicholas Tang; Siying Ma; Nicolas Negre; Hui Gong; Kevin P White; Jingdong Tian
Journal:  Nat Biotechnol       Date:  2011-04-24       Impact factor: 54.908

3.  A dodecameric CcmK2 structure suggests β-carboxysomal shell facets have a double-layered organization.

Authors:  Bożena Samborska; Matthew S Kimber
Journal:  Structure       Date:  2012-06-28       Impact factor: 5.006

4.  Bacterial microcompartment shells of diverse functional types possess pentameric vertex proteins.

Authors:  Nicole M Wheatley; Soheil D Gidaniyan; Yuxi Liu; Duilio Cascio; Todd O Yeates
Journal:  Protein Sci       Date:  2013-04-08       Impact factor: 6.725

5.  The photosynthetic apparatus of Prochlorococcus: Insights through comparative genomics.

Authors:  W R Hess; G Rocap; C S Ting; F Larimer; S Stilwagen; J Lamerdin; S W Chisholm
Journal:  Photosynth Res       Date:  2001       Impact factor: 3.573

6.  Generating a synthetic genome by whole genome assembly: phiX174 bacteriophage from synthetic oligonucleotides.

Authors:  Hamilton O Smith; Clyde A Hutchison; Cynthia Pfannkoch; J Craig Venter
Journal:  Proc Natl Acad Sci U S A       Date:  2003-12-02       Impact factor: 11.205

7.  GeneDesign: rapid, automated design of multikilobase synthetic genes.

Authors:  Sarah M Richardson; Sarah J Wheelan; Robert M Yarrington; Jef D Boeke
Journal:  Genome Res       Date:  2006-02-15       Impact factor: 9.043

8.  Towards automated crystallographic structure refinement with phenix.refine.

Authors:  Pavel V Afonine; Ralf W Grosse-Kunstleve; Nathaniel Echols; Jeffrey J Headd; Nigel W Moriarty; Marat Mustyakimov; Thomas C Terwilliger; Alexandre Urzhumtsev; Peter H Zwart; Paul D Adams
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2012-03-16

9.  The pentameric vertex proteins are necessary for the icosahedral carboxysome shell to function as a CO2 leakage barrier.

Authors:  Fei Cai; Balaraj B Menon; Gordon C Cannon; Kenneth J Curry; Jessup M Shively; Sabine Heinhorst
Journal:  PLoS One       Date:  2009-10-21       Impact factor: 3.240

10.  Structural analysis of CsoS1A and the protein shell of the Halothiobacillus neapolitanus carboxysome.

Authors:  Yingssu Tsai; Michael R Sawaya; Gordon C Cannon; Fei Cai; Eric B Williams; Sabine Heinhorst; Cheryl A Kerfeld; Todd O Yeates
Journal:  PLoS Biol       Date:  2007-06       Impact factor: 8.029

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  23 in total

1.  The small RbcS-like domains of the β-carboxysome structural protein CcmM bind RubisCO at a site distinct from that binding the RbcS subunit.

Authors:  Patrick Ryan; Taylor J B Forrester; Charles Wroblewski; Tristan M G Kenney; Elena N Kitova; John S Klassen; Matthew S Kimber
Journal:  J Biol Chem       Date:  2018-12-27       Impact factor: 5.157

2.  Interactions and structural variability of β-carboxysomal shell protein CcmL.

Authors:  Thomas J Keeling; Bożena Samborska; Ryan W Demers; Matthew S Kimber
Journal:  Photosynth Res       Date:  2014-02-07       Impact factor: 3.573

3.  Structure and identification of a pterin dehydratase-like protein as a ribulose-bisphosphate carboxylase/oxygenase (RuBisCO) assembly factor in the α-carboxysome.

Authors:  Nicole M Wheatley; Christopher D Sundberg; Soheil D Gidaniyan; Duilio Cascio; Todd O Yeates
Journal:  J Biol Chem       Date:  2014-01-23       Impact factor: 5.157

4.  Symmetry breaking and structural polymorphism in a bacterial microcompartment shell protein for choline utilization.

Authors:  Jessica M Ochoa; Vy N Nguyen; Mengxiao Nie; Michael R Sawaya; Thomas A Bobik; Todd O Yeates
Journal:  Protein Sci       Date:  2020-09-14       Impact factor: 6.725

Review 5.  Bacterial microcompartments: widespread prokaryotic organelles for isolation and optimization of metabolic pathways.

Authors:  Thomas A Bobik; Brent P Lehman; Todd O Yeates
Journal:  Mol Microbiol       Date:  2015-08-03       Impact factor: 3.501

Review 6.  Engineering nanoreactors using bacterial microcompartment architectures.

Authors:  Jefferson S Plegaria; Cheryl A Kerfeld
Journal:  Curr Opin Biotechnol       Date:  2017-10-13       Impact factor: 9.740

Review 7.  Bacterial microcompartments.

Authors:  Cheryl A Kerfeld; Clement Aussignargues; Jan Zarzycki; Fei Cai; Markus Sutter
Journal:  Nat Rev Microbiol       Date:  2018-03-05       Impact factor: 60.633

8.  Characterization of a planctomycetal organelle: a novel bacterial microcompartment for the aerobic degradation of plant saccharides.

Authors:  Onur Erbilgin; Kent L McDonald; Cheryl A Kerfeld
Journal:  Appl Environ Microbiol       Date:  2014-01-31       Impact factor: 4.792

9.  Identification of a unique Fe-S cluster binding site in a glycyl-radical type microcompartment shell protein.

Authors:  Michael C Thompson; Nicole M Wheatley; Julien Jorda; Michael R Sawaya; Soheil D Gidaniyan; Hoda Ahmed; Zhongyu Yang; Krystal N McCarty; Julian P Whitelegge; Todd O Yeates
Journal:  J Mol Biol       Date:  2014-08-04       Impact factor: 5.469

10.  The Prochlorococcus carbon dioxide-concentrating mechanism: evidence of carboxysome-associated heterogeneity.

Authors:  Claire S Ting; Katharine H Dusenbury; Reid A Pryzant; Kathleen W Higgins; Catherine J Pang; Christie E Black; Ellen M Beauchamp
Journal:  Photosynth Res       Date:  2014-09-06       Impact factor: 3.573

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