Literature DB >> 23948105

Epigenetics of cellular reprogramming.

Raga Krishnakumar1, Robert H Blelloch.   

Abstract

Cells are constantly changing their state of equilibrium in response to internal and external stimuli. These changes in cell identity are driven by highly coordinated modulation of gene expression. This coordinated regulation is achieved in large part due to changes in the structure and composition of the chromatin, driven by epigenetic modulators. Recent discoveries in cellular and genomic reprogramming have highlighted the importance of chromatin modifications to reach and uphold the fidelity of target cell states. In this review, we focus on the latest work addressing the mechanisms surrounding the epigenetic regulation of various types of reprogramming, including somatic cell nuclear transfer (SCNT), cell fusion and transcription factor-induced and microRNA-induced pluripotency. The studies covered herein showcase the interplay between these epigenetic pathways, and highlight the importance of furthering our understanding of these connections to form a clearer picture of the mechanisms underlying stable cell fate transitions.
Copyright © 2013 Elsevier Ltd. All rights reserved.

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Year:  2013        PMID: 23948105      PMCID: PMC4359361          DOI: 10.1016/j.gde.2013.06.005

Source DB:  PubMed          Journal:  Curr Opin Genet Dev        ISSN: 0959-437X            Impact factor:   5.578


  54 in total

1.  Multiple targets of miR-302 and miR-372 promote reprogramming of human fibroblasts to induced pluripotent stem cells.

Authors:  Deepa Subramanyam; Samy Lamouille; Robert L Judson; Jason Y Liu; Nathan Bucay; Rik Derynck; Robert Blelloch
Journal:  Nat Biotechnol       Date:  2011-04-13       Impact factor: 54.908

2.  Histone deacetylase inhibition improves activation of ribosomal RNA genes and embryonic nucleolar reprogramming in cloned mouse embryos.

Authors:  Hong-Thuy Bui; Hyeon-Jeong Seo; Mi-Rung Park; Jong-Yi Park; Nguyen Van Thuan; Teruhiko Wakayama; Jin-Hoi Kim
Journal:  Biol Reprod       Date:  2011-07-13       Impact factor: 4.285

3.  The histone demethylases Jhdm1a/1b enhance somatic cell reprogramming in a vitamin-C-dependent manner.

Authors:  Tao Wang; Keshi Chen; Xiaoming Zeng; Jianguo Yang; Yun Wu; Xi Shi; Baoming Qin; Lingwen Zeng; Miguel Angel Esteban; Guangjin Pan; Duanqing Pei
Journal:  Cell Stem Cell       Date:  2011-11-17       Impact factor: 24.633

Review 4.  Mechanisms and functions of Tet protein-mediated 5-methylcytosine oxidation.

Authors:  Hao Wu; Yi Zhang
Journal:  Genes Dev       Date:  2011-12-01       Impact factor: 11.361

5.  Reprogramming factor expression initiates widespread targeted chromatin remodeling.

Authors:  Richard P Koche; Zachary D Smith; Mazhar Adli; Hongcang Gu; Manching Ku; Andreas Gnirke; Bradley E Bernstein; Alexander Meissner
Journal:  Cell Stem Cell       Date:  2011-01-07       Impact factor: 24.633

6.  Highly efficient miRNA-mediated reprogramming of mouse and human somatic cells to pluripotency.

Authors:  Frederick Anokye-Danso; Chinmay M Trivedi; Denise Juhr; Mudit Gupta; Zheng Cui; Ying Tian; Yuzhen Zhang; Wenli Yang; Peter J Gruber; Jonathan A Epstein; Edward E Morrisey
Journal:  Cell Stem Cell       Date:  2011-04-08       Impact factor: 24.633

7.  The role of Tet3 DNA dioxygenase in epigenetic reprogramming by oocytes.

Authors:  Tian-Peng Gu; Fan Guo; Hui Yang; Hai-Ping Wu; Gui-Fang Xu; Wei Liu; Zhi-Guo Xie; Linyu Shi; Xinyi He; Seung-gi Jin; Khursheed Iqbal; Yujiang Geno Shi; Zixin Deng; Piroska E Szabó; Gerd P Pfeifer; Jinsong Li; Guo-Liang Xu
Journal:  Nature       Date:  2011-09-04       Impact factor: 49.962

8.  Dynamic regulation of 5-hydroxymethylcytosine in mouse ES cells and during differentiation.

Authors:  Gabriella Ficz; Miguel R Branco; Stefanie Seisenberger; Fátima Santos; Felix Krueger; Timothy A Hore; C Joana Marques; Simon Andrews; Wolf Reik
Journal:  Nature       Date:  2011-04-03       Impact factor: 49.962

9.  Regulation of somatic cell reprogramming through inducible mir-302 expression.

Authors:  Shi-Lung Lin; Donald C Chang; Chun-Hung Lin; Shao-Yao Ying; Davey Leu; David T S Wu
Journal:  Nucleic Acids Res       Date:  2010-09-24       Impact factor: 16.971

10.  Histone variant macroH2A confers resistance to nuclear reprogramming.

Authors:  Vincent Pasque; Astrid Gillich; Nigel Garrett; John B Gurdon
Journal:  EMBO J       Date:  2011-05-06       Impact factor: 11.598

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  20 in total

Review 1.  Epigenetic regulation of stemness maintenance in the neurogenic niches.

Authors:  Raquel Montalbán-Loro; Ana Domingo-Muelas; Alexandra Bizy; Sacri R Ferrón
Journal:  World J Stem Cells       Date:  2015-05-26       Impact factor: 5.326

2.  Pluripotent Conversion of Muscle Stem Cells Without Reprogramming Factors or Small Molecules.

Authors:  Bipasha Bose; Sudheer Shenoy P
Journal:  Stem Cell Rev Rep       Date:  2016-02       Impact factor: 5.739

Review 3.  Molecular mechanisms of transcription factor mediated cell reprogramming: conversion of liver to pancreas.

Authors:  Sebastian L Wild; David Tosh
Journal:  Biochem Soc Trans       Date:  2021-04-30       Impact factor: 5.407

4.  Efficient differentiation of steroidogenic and germ-like cells from epigenetically-related iPSCs derived from ovarian granulosa cells.

Authors:  Raymond Anchan; Behzad Gerami-Naini; Jennifer S Lindsey; Joshua W K Ho; Adam Kiezun; Shane Lipskind; Nicholas Ng; Joseph A LiCausi; Chloe S Kim; Paul Brezina; Thomas Tuschl; Richard Maas; William G Kearns; Zev Williams
Journal:  PLoS One       Date:  2015-03-09       Impact factor: 3.240

5.  Synthetic epigenetics-towards intelligent control of epigenetic states and cell identity.

Authors:  Tomasz P Jurkowski; Mirunalini Ravichandran; Peter Stepper
Journal:  Clin Epigenetics       Date:  2015-03-04       Impact factor: 6.551

6.  Syngeneic cardiac and bone marrow stromal cells display tissue-specific microRNA signatures and microRNA subsets restricted to diverse differentiation processes.

Authors:  Viviana Meraviglia; Valerio Azzimato; Luca Piacentini; Mattia Chiesa; Rupesh K Kesharwani; Caterina Frati; Maurizio C Capogrossi; Carlo Gaetano; Giulio Pompilio; Gualtiero I Colombo; Alessandra Rossini
Journal:  PLoS One       Date:  2014-09-18       Impact factor: 3.240

7.  Improved development of somatic cell cloned mouse embryos by vitamin C and latrunculin A.

Authors:  Anna Mallol; Josep Santaló; Elena Ibáñez
Journal:  PLoS One       Date:  2015-03-06       Impact factor: 3.240

8.  DNA methyltransferase 1 mutations and mitochondrial pathology: is mtDNA methylated?

Authors:  Alessandra Maresca; Mirko Zaffagnini; Leonardo Caporali; Valerio Carelli; Claudia Zanna
Journal:  Front Genet       Date:  2015-03-12       Impact factor: 4.599

Review 9.  Applications of Induced Pluripotent Stem Cells in Studying the Neurodegenerative Diseases.

Authors:  Wenbin Wan; Lan Cao; Bill Kalionis; Shijin Xia; Xiantao Tai
Journal:  Stem Cells Int       Date:  2015-07-09       Impact factor: 5.443

Review 10.  Epigenetic inheritance and the missing heritability.

Authors:  Marco Trerotola; Valeria Relli; Pasquale Simeone; Saverio Alberti
Journal:  Hum Genomics       Date:  2015-07-28       Impact factor: 4.639

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