Literature DB >> 23943406

Quinary protein structure and the consequences of crowding in living cells: leaving the test-tube behind.

Anna Jean Wirth1, Martin Gruebele.   

Abstract

Although the importance of weak protein-protein interactions has been understood since the 1980s, scant attention has been paid to this "quinary structure". The transient nature of quinary structure facilitates dynamic sub-cellular organization through loose grouping of proteins with multiple binding partners. Despite our growing appreciation of the quinary structure paradigm in cell biology, we do not yet understand how the many forces inside the cell--the excluded volume effect, the "stickiness" of the cytoplasm, and hydrodynamic interactions--perturb the weakest functional protein interactions. We discuss the unresolved problem of how the forces in the cell modulate quinary structure, and to what extent the cell has evolved to exert control over the weakest biomolecular interactions. We conclude by highlighting the new experimental and computational tools coming on-line for in vivo studies, which are a critical next step if we are to understand quinary structure in its native environment.
© 2013 WILEY Periodicals, Inc.

Keywords:  association; in vivo; protein folding; signaling

Mesh:

Substances:

Year:  2013        PMID: 23943406     DOI: 10.1002/bies.201300080

Source DB:  PubMed          Journal:  Bioessays        ISSN: 0265-9247            Impact factor:   4.345


  44 in total

1.  Quantitative assessments of the distinct contributions of polypeptide backbone amides versus side chain groups to chain expansion via chemical denaturation.

Authors:  Alex S Holehouse; Kanchan Garai; Nicholas Lyle; Andreas Vitalis; Rohit V Pappu
Journal:  J Am Chem Soc       Date:  2015-02-23       Impact factor: 15.419

2.  Diffusion within the cytoplasm: a mesoscale model of interacting macromolecules.

Authors:  Fabio Trovato; Valentina Tozzini
Journal:  Biophys J       Date:  2014-12-02       Impact factor: 4.033

3.  Weak protein-protein interactions in live cells are quantified by cell-volume modulation.

Authors:  Shahar Sukenik; Pin Ren; Martin Gruebele
Journal:  Proc Natl Acad Sci U S A       Date:  2017-06-12       Impact factor: 11.205

4.  Evidence for intermolecular domain exchange in the Fab domains of dimer and oligomers of an IgG1 monoclonal antibody.

Authors:  Yin Luo; Stephen W Raso; Judith Gallant; Colleen Steinmeyer; Yasuko Mabuchi; Zhaojiang Lu; Clifford Entrican; Jason C Rouse
Journal:  MAbs       Date:  2017-06-07       Impact factor: 5.857

Review 5.  To be disordered or not to be disordered: is that still a question for proteins in the cell?

Authors:  Kris Pauwels; Pierre Lebrun; Peter Tompa
Journal:  Cell Mol Life Sci       Date:  2017-06-13       Impact factor: 9.261

6.  Physicochemical code for quinary protein interactions in Escherichia coli.

Authors:  Xin Mu; Seongil Choi; Lisa Lang; David Mowray; Nikolay V Dokholyan; Jens Danielsson; Mikael Oliveberg
Journal:  Proc Natl Acad Sci U S A       Date:  2017-05-23       Impact factor: 11.205

Review 7.  High-resolution studies of lysis-lysogeny decision-making in bacteriophage lambda.

Authors:  Qiuyan Shao; Jimmy T Trinh; Lanying Zeng
Journal:  J Biol Chem       Date:  2018-09-21       Impact factor: 5.157

Review 8.  Macromolecular Crowding In Vitro, In Vivo, and In Between.

Authors:  Germán Rivas; Allen P Minton
Journal:  Trends Biochem Sci       Date:  2016-09-23       Impact factor: 13.807

Review 9.  Comparing protein folding in vitro and in vivo: foldability meets the fitness challenge.

Authors:  Karan S Hingorani; Lila M Gierasch
Journal:  Curr Opin Struct Biol       Date:  2014-01-14       Impact factor: 6.809

10.  Intracellular pH modulates quinary structure.

Authors:  Rachel D Cohen; Alex J Guseman; Gary J Pielak
Journal:  Protein Sci       Date:  2015-08-30       Impact factor: 6.725

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