Literature DB >> 23941620

Role of RNA polymerase and transcription in the organization of the bacterial nucleoid.

Ding Jun Jin1, Cedric Cagliero, Yan Ning Zhou.   

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Year:  2013        PMID： 23941620      PMCID： PMC3830623          DOI： 10.1021/cr4001429

Source DB:  PubMed          Journal:  Chem Rev        ISSN： 0009-2665            Impact factor:   60.622


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  301 in total

1.  Functionality of essential genes drives gene strand-bias in bacterial genomes.

Authors:  Yan Lin; Feng Gao; Chun-Ting Zhang
Journal:  Biochem Biophys Res Commun       Date:  2010-04-24       Impact factor: 3.575

Review 2.  Effects of nucleoid-associated proteins on bacterial chromosome structure and gene expression.

Authors:  Douglas F Browning; David C Grainger; Stephen Jw Busby
Journal:  Curr Opin Microbiol       Date:  2010-10-13       Impact factor: 7.934

3.  DNA topology of highly transcribed operons in Salmonella enterica serovar Typhimurium.

Authors:  Betty M Booker; Shuang Deng; N Patrick Higgins
Journal:  Mol Microbiol       Date:  2010-09-30       Impact factor: 3.501

4.  Multiple regions along the Escherichia coli FtsK protein are implicated in cell division.

Authors:  Nelly Dubarry; Christophe Possoz; François-Xavier Barre
Journal:  Mol Microbiol       Date:  2010-10-21       Impact factor: 3.501

5.  Crowding and hydrodynamic interactions likely dominate in vivo macromolecular motion.

Authors:  Tadashi Ando; Jeffrey Skolnick
Journal:  Proc Natl Acad Sci U S A       Date:  2010-10-11       Impact factor: 11.205

Review 6.  The Escherichia coli DNA translocase FtsK.

Authors:  David J Sherratt; Lidia K Arciszewska; Estelle Crozat; James E Graham; Ian Grainge
Journal:  Biochem Soc Trans       Date:  2010-04       Impact factor: 5.407

Review 7.  DNA bridging and antibridging: a role for bacterial nucleoid-associated proteins in regulating the expression of laterally acquired genes.

Authors:  Charles J Dorman; Kelly A Kane
Journal:  FEMS Microbiol Rev       Date:  2008-12-22       Impact factor: 16.408

Review 8.  The biology of chromatin remodeling complexes.

Authors:  Cedric R Clapier; Bradley R Cairns
Journal:  Annu Rev Biochem       Date:  2009       Impact factor: 23.643

Review 9.  DNA condensation in bacteria: Interplay between macromolecular crowding and nucleoid proteins.

Authors:  Renko de Vries
Journal:  Biochimie       Date:  2010-07-06       Impact factor: 4.079

10.  Discretely calibrated regulatory loops controlled by ppGpp partition gene induction across the 'feast to famine' gradient in Escherichia coli.

Authors:  Matthew F Traxler; Vineetha M Zacharia; Stafford Marquardt; Sean M Summers; Huyen-Tran Nguyen; S Elizabeth Stark; Tyrrell Conway
Journal:  Mol Microbiol       Date:  2010-12-30       Impact factor: 3.501
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  23 in total

1.  Density of σ70 promoter-like sites in the intergenic regions dictates the redistribution of RNA polymerase during osmotic stress in Escherichia coli.

Authors:  Zhe Sun; Cedric Cagliero; Jerome Izard; Yixiong Chen; Yan Ning Zhou; William F Heinz; Thomas D Schneider; Ding Jun Jin
Journal:  Nucleic Acids Res       Date:  2019-05-07       Impact factor: 16.971

2.  Time-dependent effects of transcription- and translation-halting drugs on the spatial distributions of the Escherichia coli chromosome and ribosomes.

Authors:  Somenath Bakshi; Heejun Choi; Jagannath Mondal; James C Weisshaar
Journal:  Mol Microbiol       Date:  2014-10-22       Impact factor: 3.501

Review 3.  Nucleolus-like compartmentalization of the transcription machinery in fast-growing bacterial cells.

Authors:  Ding Jun Jin; Carmen Mata Martin; Zhe Sun; Cedric Cagliero; Yan Ning Zhou
Journal:  Crit Rev Biochem Mol Biol       Date:  2016-12-23       Impact factor: 8.250

4.  Bacterial Nucleoid: Interplay of DNA Demixing and Supercoiling.

Authors:  Marc Joyeux
Journal:  Biophys J       Date:  2019-09-26       Impact factor: 4.033

5.  Robustness of the Process of Nucleoid Exclusion of Protein Aggregates in Escherichia coli.

Authors:  Ramakanth Neeli-Venkata; Antti Martikainen; Abhishekh Gupta; Nadia Gonçalves; Jose Fonseca; Andre S Ribeiro
Journal:  J Bacteriol       Date:  2016-01-04       Impact factor: 3.490

6.  Lack of the H-NS Protein Results in Extended and Aberrantly Positioned DNA during Chromosome Replication and Segregation in Escherichia coli.

Authors:  Emily Helgesen; Solveig Fossum-Raunehaug; Kirsten Skarstad
Journal:  J Bacteriol       Date:  2016-03-31       Impact factor: 3.490

7.  Nucleoid and cytoplasmic localization of small RNAs in Escherichia coli.

Authors:  Huanjie Sheng; Weston T Stauffer; Razika Hussein; Chris Lin; Han N Lim
Journal:  Nucleic Acids Res       Date:  2017-03-17       Impact factor: 16.971

8.  The effects of polydisperse crowders on the compaction of the Escherichia coli nucleoid.

Authors:  Da Yang; Jaana Männik; Scott T Retterer; Jaan Männik
Journal:  Mol Microbiol       Date:  2020-02-05       Impact factor: 3.501

Review 9.  Coevolution of the Organization and Structure of Prokaryotic Genomes.

Authors:  Marie Touchon; Eduardo P C Rocha
Journal:  Cold Spring Harb Perspect Biol       Date:  2016-01-04       Impact factor: 10.005

10.  Live-cell superresolution microscopy reveals the organization of RNA polymerase in the bacterial nucleoid.

Authors:  Mathew Stracy; Christian Lesterlin; Federico Garza de Leon; Stephan Uphoff; Pawel Zawadzki; Achillefs N Kapanidis
Journal:  Proc Natl Acad Sci U S A       Date:  2015-07-29       Impact factor: 11.205
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