Literature DB >> 23938204

Teaching old NCATs new tricks: using non-canonical amino acid tagging to study neuronal plasticity.

F I Hinz1, D C Dieterich, E M Schuman.   

Abstract

The non-canonical amino acid labeling techniques BONCAT (bioorthogonal non-canonical amino acid tagging) and FUNCAT (fluorescent non-canonical amino acid tagging) enable the specific identification and visualization of newly synthesized proteins. Recently, these techniques have been applied to neuronal systems to elucidate protein synthesis dynamics during plasticity, identify stimulation-induced proteomes and subproteomes and to investigate local protein synthesis in specific subcellular compartments. The next generation of tools and applications, reviewed here, includes the development of new tags, the quantitative identification of newly synthesized proteins, the application of NCAT to whole animals, and the ability to genetically restrict NCAT labeling. These techniques will enable not only improved detection but also allow new scientific questions to be tackled.
Copyright © 2013 Elsevier Ltd. All rights reserved.

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Year:  2013        PMID: 23938204      PMCID: PMC5321483          DOI: 10.1016/j.cbpa.2013.07.021

Source DB:  PubMed          Journal:  Curr Opin Chem Biol        ISSN: 1367-5931            Impact factor:   8.822


  44 in total

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2.  Transmembrane receptor DCC associates with protein synthesis machinery and regulates translation.

Authors:  Joseph Tcherkezian; Perry A Brittis; Franziska Thomas; Philippe P Roux; John G Flanagan
Journal:  Cell       Date:  2010-04-29       Impact factor: 41.582

3.  Labeling, detection and identification of newly synthesized proteomes with bioorthogonal non-canonical amino-acid tagging.

Authors:  Daniela C Dieterich; Jennifer J Lee; A James Link; Johannes Graumann; David A Tirrell; Erin M Schuman
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4.  Peptidotriazoles on solid phase: [1,2,3]-triazoles by regiospecific copper(i)-catalyzed 1,3-dipolar cycloadditions of terminal alkynes to azides.

Authors:  Christian W Tornøe; Caspar Christensen; Morten Meldal
Journal:  J Org Chem       Date:  2002-05-03       Impact factor: 4.354

5.  Activity level controls postsynaptic composition and signaling via the ubiquitin-proteasome system.

Authors:  Michael D Ehlers
Journal:  Nat Neurosci       Date:  2003-03       Impact factor: 24.884

6.  Mutant methionyl-tRNA synthetase from bacteria enables site-selective N-terminal labeling of proteins expressed in mammalian cells.

Authors:  John T Ngo; Erin M Schuman; David A Tirrell
Journal:  Proc Natl Acad Sci U S A       Date:  2013-03-11       Impact factor: 11.205

7.  Two-color labeling of temporally defined protein populations in mammalian cells.

Authors:  Kimberly E Beatty; David A Tirrell
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8.  A strain-promoted [3 + 2] azide-alkyne cycloaddition for covalent modification of biomolecules in living systems.

Authors:  Nicholas J Agard; Jennifer A Prescher; Carolyn R Bertozzi
Journal:  J Am Chem Soc       Date:  2004-11-24       Impact factor: 15.419

9.  Targeting adenosine monophosphate-activated protein kinase (AMPK) in preclinical models reveals a potential mechanism for the treatment of neuropathic pain.

Authors:  Ohannes K Melemedjian; Marina N Asiedu; Dipti V Tillu; Raul Sanoja; Jin Yan; Arianna Lark; Arkady Khoutorsky; Jessica Johnson; Katherine A Peebles; Talya Lepow; Nahum Sonenberg; Gregory Dussor; Theodore J Price
Journal:  Mol Pain       Date:  2011-09-21       Impact factor: 3.395

10.  Bioorthogonal chemistry: fishing for selectivity in a sea of functionality.

Authors:  Ellen M Sletten; Carolyn R Bertozzi
Journal:  Angew Chem Int Ed Engl       Date:  2009       Impact factor: 15.336

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  12 in total

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2.  Glutamate Receptor Trafficking and Protein Synthesis Mediate the Facilitation of LTP by Secreted Amyloid Precursor Protein-Alpha.

Authors:  Bruce G Mockett; Diane Guévremont; Megan K Elder; Karen D Parfitt; Katie Peppercorn; Jodi Morrissey; Anurag Singh; Timothy J Hintz; Lisa Kochen; Susanne Tom Dieck; Erin Schuman; Warren P Tate; Joanna M Williams; Wickliffe C Abraham
Journal:  J Neurosci       Date:  2019-02-25       Impact factor: 6.167

3.  Protein Translation in the Nucleus Accumbens Is Dysregulated during Cocaine Withdrawal and Required for Expression of Incubation of Cocaine Craving.

Authors:  Craig T Werner; Michael T Stefanik; Mike Milovanovic; Aaron Caccamise; Marina E Wolf
Journal:  J Neurosci       Date:  2018-02-05       Impact factor: 6.167

4.  Pathogenic DDX3X Mutations Impair RNA Metabolism and Neurogenesis during Fetal Cortical Development.

Authors:  Ashley L Lennox; Mariah L Hoye; Ruiji Jiang; Bethany L Johnson-Kerner; Lindsey A Suit; Srivats Venkataramanan; Charles J Sheehan; Fernando C Alsina; Brieana Fregeau; Kimberly A Aldinger; Ching Moey; Iryna Lobach; Alexandra Afenjar; Dusica Babovic-Vuksanovic; Stéphane Bézieau; Patrick R Blackburn; Jens Bunt; Lydie Burglen; Philippe M Campeau; Perrine Charles; Brian H Y Chung; Benjamin Cogné; Cynthia Curry; Maria Daniela D'Agostino; Nataliya Di Donato; Laurence Faivre; Delphine Héron; A Micheil Innes; Bertrand Isidor; Boris Keren; Amy Kimball; Eric W Klee; Paul Kuentz; Sébastien Küry; Dominique Martin-Coignard; Ghayda Mirzaa; Cyril Mignot; Noriko Miyake; Naomichi Matsumoto; Atsushi Fujita; Caroline Nava; Mathilde Nizon; Diana Rodriguez; Lot Snijders Blok; Christel Thauvin-Robinet; Julien Thevenon; Marie Vincent; Alban Ziegler; William Dobyns; Linda J Richards; A James Barkovich; Stephen N Floor; Debra L Silver; Elliott H Sherr
Journal:  Neuron       Date:  2020-03-04       Impact factor: 17.173

Review 5.  Moving messages in the developing brain-emerging roles for mRNA transport and local translation in neural stem cells.

Authors:  Louis-Jan Pilaz; Debra L Silver
Journal:  FEBS Lett       Date:  2017-04-06       Impact factor: 4.124

6.  Identification of Newly Synthesized Proteins by Echinococcus granulosus Protoscoleces upon Induction of Strobilation.

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Journal:  PLoS Negl Trop Dis       Date:  2015-09-22

7.  Imaging complex protein metabolism in live organisms by stimulated Raman scattering microscopy with isotope labeling.

Authors:  Lu Wei; Yihui Shen; Fang Xu; Fanghao Hu; Jamie K Harrington; Kimara L Targoff; Wei Min
Journal:  ACS Chem Biol       Date:  2015-01-15       Impact factor: 5.100

8.  Decreased synthesis of ribosomal proteins in tauopathy revealed by non-canonical amino acid labelling.

Authors:  Harrison Tudor Evans; Joseph Benetatos; Marloes van Roijen; Liviu-Gabriel Bodea; Jürgen Götz
Journal:  EMBO J       Date:  2019-05-22       Impact factor: 11.598

9.  PUNCH-P for global translatome profiling: Methodology, insights and comparison to other techniques.

Authors:  Ranen Aviner; Tamar Geiger; Orna Elroy-Stein
Journal:  Translation (Austin)       Date:  2013-12-18

10.  Exploring structural dynamics of a membrane protein by combining bioorthogonal chemistry and cysteine mutagenesis.

Authors:  Kanchan Gupta; Gilman Es Toombes; Kenton J Swartz
Journal:  Elife       Date:  2019-11-12       Impact factor: 8.140

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