Literature DB >> 23931283

Intermolecular vibrations in hydrophobic amino acid crystals: experiments and calculations.

Michael R C Williams1, Daniel J Aschaffenburg, Benjamin K Ofori-Okai, Charles A Schmuttenmaer.   

Abstract

Intermolecular vibrations of amino acid crystals occur in the THz, or far-infrared, region of the electromagnetic spectrum. We have measured the THz and Raman spectra of DL-leucine as well as two polymorphs of DL-valine, the spectroscopic properties of which have not previously been compared. Theoretical modeling of intermolecular vibrations in hydrophobic amino acids is challenging because the van der Waals interactions between molecules are not accounted for in standard density functional theory. Therefore, to calculate the vibrational modes, we used a recently developed approach that includes these nonlocal electron correlation forces. We discuss methods for comparing results from different theoretical models using metrics other than calculated vibrational frequency and intensity, and we also report a new approach enabling concise comparison of vibrational modes that involve complicated mixtures of inter- and intramolecular displacements.

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Year:  2013        PMID: 23931283     DOI: 10.1021/jp406730a

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  5 in total

1.  Optimizing a coarse-grained space for approximate normal-mode vibrations of molecular heterodimers.

Authors:  Makoto Isogai; Masataka Seshimo; Hirohiko Houjou
Journal:  J Mol Model       Date:  2021-04-27       Impact factor: 1.810

2.  Moving in the Right Direction: Protein Vibrations Steering Function.

Authors:  Katherine A Niessen; Mengyang Xu; Alessandro Paciaroni; Andrea Orecchini; Edward H Snell; Andrea G Markelz
Journal:  Biophys J       Date:  2017-03-14       Impact factor: 4.033

3.  Indices to evaluate the reliability of coarse-grained representations of mixed inter/intramolecular vibrations.

Authors:  Makoto Isogai; Hirohiko Houjou
Journal:  J Mol Model       Date:  2018-08-02       Impact factor: 1.810

4.  Terahertz Spectroscopy of Tetrameric Peptides.

Authors:  Jens Neu; Elizabeth A Stone; Jacob A Spies; Golo Storch; Ayaka S Hatano; Brandon Q Mercado; Scott J Miller; Charles A Schmuttenmaer
Journal:  J Phys Chem Lett       Date:  2019-05-08       Impact factor: 6.475

5.  Transformation of terahertz vibrational modes of cytosine under hydration.

Authors:  Donggun Lee; Hwayeong Cheon; Seo-Yeon Jeong; Joo-Hiuk Son
Journal:  Sci Rep       Date:  2020-06-24       Impact factor: 4.379

  5 in total

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