| Literature DB >> 23929679 |
Christin Schärfer1, Tanja Schulz-Gasch, Jérôme Hert, Lennart Heinzerling, Benjamin Schulz, Therese Inhester, Martin Stahl, Matthias Rarey.
Abstract
The generation of sets of low-energy conformations for a given molecule is a central task in drug design. Herein we present a new conformation generator called CONFECT that builds on our previously published library of torsion patterns. Conformations are generated as well as ranked by means of normalized frequency distributions derived from the Cambridge Structural Database (CSD). Following an incremental construction approach, conformations are selected from a systematic enumeration within energetic boundaries. The new tool is benchmarked in several different ways, indicating that it allows the efficient generation of high-quality conformation ensembles. These ensembles are smaller than those produced by state-of-the-art tools, yet they effectively cover conformational space.Entities:
Keywords: CSD; bioactive conformations; computational chemistry; conformation generation; torsion libraries
Mesh:
Year: 2013 PMID: 23929679 DOI: 10.1002/cmdc.201300242
Source DB: PubMed Journal: ChemMedChem ISSN: 1860-7179 Impact factor: 3.466