Literature DB >> 23929033

On representative and illustrative comparisons with real data in bioinformatics: response to the letter to the editor by Smith et al.

Anne-Laure Boulesteix1.   

Abstract

Mesh：

Year:  2013        PMID： 23929033     DOI： 10.1093/bioinformatics/btt458

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


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  11 in total

1.  Testing and Validation of Computational Methods for Mass Spectrometry.

Authors:  Laurent Gatto; Kasper D Hansen; Michael R Hoopmann; Henning Hermjakob; Oliver Kohlbacher; Andreas Beyer
Journal:  J Proteome Res       Date:  2015-11-17       Impact factor: 4.466

2.  The fractured landscape of RNA-seq alignment: the default in our STARs.

Authors:  Sara Ballouz; Alexander Dobin; Thomas R Gingeras; Jesse Gillis
Journal:  Nucleic Acids Res       Date:  2018-06-01       Impact factor: 16.971

3.  Ten simple rules for reducing overoptimistic reporting in methodological computational research.

Authors:  Anne-Laure Boulesteix
Journal:  PLoS Comput Biol       Date:  2015-04-23       Impact factor: 4.475

4.  Factors affecting the accuracy of a class prediction model in gene expression data.

Authors:  Putri W Novianti; Victor L Jong; Kit C B Roes; Marinus J C Eijkemans
Journal:  BMC Bioinformatics       Date:  2015-06-21       Impact factor: 3.169

5.  Progress and challenges in the computational prediction of gene function using networks: 2012-2013 update.

Authors:  Paul Pavlidis; Jesse Gillis
Journal:  F1000Res       Date:  2013-10-31

6.  Benchmark for multi-cellular segmentation of bright field microscopy images.

Authors:  Assaf Zaritsky; Nathan Manor; Lior Wolf; Eshel Ben-Jacob; Ilan Tsarfaty
Journal:  BMC Bioinformatics       Date:  2013-11-07       Impact factor: 3.169

7.  Added predictive value of omics data: specific issues related to validation illustrated by two case studies.

Authors:  Riccardo De Bin; Tobias Herold; Anne-Laure Boulesteix
Journal:  BMC Med Res Methodol       Date:  2014-10-28       Impact factor: 4.615

8.  A measure of the impact of CV incompleteness on prediction error estimation with application to PCA and normalization.

Authors:  Roman Hornung; Christoph Bernau; Caroline Truntzer; Rory Wilson; Thomas Stadler; Anne-Laure Boulesteix
Journal:  BMC Med Res Methodol       Date:  2015-11-04       Impact factor: 4.615

9.  Cross-study validation for the assessment of prediction algorithms.

Authors:  Christoph Bernau; Markus Riester; Anne-Laure Boulesteix; Giovanni Parmigiani; Curtis Huttenhower; Levi Waldron; Lorenzo Trippa
Journal:  Bioinformatics       Date:  2014-06-15       Impact factor: 6.937

10.  Towards evidence-based computational statistics: lessons from clinical research on the role and design of real-data benchmark studies.

Authors:  Anne-Laure Boulesteix; Rory Wilson; Alexander Hapfelmeier
Journal:  BMC Med Res Methodol       Date:  2017-09-09       Impact factor: 4.615
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