Literature DB >> 23928503

Homogenization of sample absorption for the imaging of large and dense fossils with synchrotron microtomography.

Sophie Sanchez1, Vincent Fernandez, Stephanie E Pierce, Paul Tafforeau.   

Abstract

Propagation phase-contrast synchrotron radiation microtomography (PPC-SRμCT) has proved to be very successful for examining fossils. Because fossils range widely in taphonomic preservation, size, shape and density, X-ray computed tomography protocols are constantly being developed and refined. Here we present a 1-h procedure that combines a filtered high-energy polychromatic beam with long-distance PPC-SRμCT (sample to detector: 4-16 m) and an attenuation protocol normalizing the absorption profile (tested on 13-cm-thick and 5.242 g cm(-3) locally dense samples but applicable to 20-cm-thick samples). This approach provides high-quality imaging results, which show marked improvement relative to results from images obtained without the attenuation protocol in apparent transmission, contrast and signal-to-noise ratio. The attenuation protocol involves immersing samples in a tube filled with aluminum or glass balls in association with a U-shaped aluminum profiler. This technique therefore provides access to a larger dynamic range of the detector used for tomographic reconstruction. This protocol homogenizes beam-hardening artifacts, thereby rendering it effective for use with conventional μCT scanners.

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Year:  2013        PMID: 23928503     DOI: 10.1038/nprot.2013.098

Source DB:  PubMed          Journal:  Nat Protoc        ISSN: 1750-2799            Impact factor:   13.491


  12 in total

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Authors:  D Paganin; S C Mayo; T E Gureyev; P R Miller; S W Wilkins
Journal:  J Microsc       Date:  2002-04       Impact factor: 1.758

2.  Phase contrast synchrotron microtomography: improving noninvasive investigations of fossil embryos in ovo.

Authors:  Vincent Fernandez; Eric Buffetaut; Eric Maire; Jérôme Adrien; Varavudh Suteethorn; Paul Tafforeau
Journal:  Microsc Microanal       Date:  2012-02       Impact factor: 4.127

3.  Synchrotron X-ray tomographic microscopy of fossil embryos.

Authors:  Philip C J Donoghue; Stefan Bengtson; Xi-ping Dong; Neil J Gostling; Therese Huldtgren; John A Cunningham; Chongyu Yin; Zhao Yue; Fan Peng; Marco Stampanoni
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4.  Invited article: the fast readout low noise camera as a versatile x-ray detector for time resolved dispersive extended x-ray absorption fine structure and diffraction studies of dynamic problems in materials science, chemistry, and catalysis.

Authors:  Jean-Claude Labiche; Olivier Mathon; Sakura Pascarelli; Mark A Newton; Gemma Guilera Ferre; Caroline Curfs; Gavin Vaughan; Alejandro Homs; David Fernandez Carreiras
Journal:  Rev Sci Instrum       Date:  2007-09       Impact factor: 1.523

5.  Phase contrast X-ray synchrotron imaging: opening access to fossil inclusions in opaque amber.

Authors:  Malvina Lak; Didier Néraudeau; André Nel; Peter Cloetens; Vincent Perrichot; Paul Tafforeau
Journal:  Microsc Microanal       Date:  2008-03-03       Impact factor: 4.127

6.  Skull and brain of a 300-million-year-old chimaeroid fish revealed by synchrotron holotomography.

Authors:  Alan Pradel; Max Langer; John G Maisey; Didier Geffard-Kuriyama; Peter Cloetens; Philippe Janvier; Paul Tafforeau
Journal:  Proc Natl Acad Sci U S A       Date:  2009-03-09       Impact factor: 11.205

7.  The endocast of MH1, Australopithecus sediba.

Authors:  Kristian J Carlson; Dietrich Stout; Tea Jashashvili; Darryl J de Ruiter; Paul Tafforeau; Keely Carlson; Lee R Berger
Journal:  Science       Date:  2011-09-08       Impact factor: 47.728

8.  Three-dimensional synchrotron virtual paleohistology: a new insight into the world of fossil bone microstructures.

Authors:  Sophie Sanchez; Per E Ahlberg; Katherine M Trinajstic; Alessandro Mirone; Paul Tafforeau
Journal:  Microsc Microanal       Date:  2012-10-02       Impact factor: 4.127

9.  Vertebral architecture in the earliest stem tetrapods.

Authors:  Stephanie E Pierce; Per E Ahlberg; John R Hutchinson; Julia L Molnar; Sophie Sanchez; Paul Tafforeau; Jennifer A Clack
Journal:  Nature       Date:  2013-01-13       Impact factor: 49.962

10.  A Middle Miocene hominoid from Thailand and orangutan origins.

Authors:  Yaowalak Chaimanee; Dominique Jolly; Mouloud Benammi; Paul Tafforeau; Danielle Duzer; Issam Moussa; Jean-Jacques Jaeger
Journal:  Nature       Date:  2003-03-06       Impact factor: 49.962

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  6 in total

1.  Imaging intact human organs with local resolution of cellular structures using hierarchical phase-contrast tomography.

Authors:  C L Walsh; P Tafforeau; W L Wagner; D J Jafree; A Bellier; C Werlein; M P Kühnel; E Boller; S Walker-Samuel; J L Robertus; D A Long; J Jacob; S Marussi; E Brown; N Holroyd; D D Jonigk; M Ackermann; P D Lee
Journal:  Nat Methods       Date:  2021-11-04       Impact factor: 28.547

2.  Human fetal whole-body postmortem microfocus computed tomographic imaging.

Authors:  Ian C Simcock; Susan C Shelmerdine; J Ciaran Hutchinson; Neil J Sebire; Owen J Arthurs
Journal:  Nat Protoc       Date:  2021-04-14       Impact factor: 13.491

3.  Transition of Eocene whales from land to sea: evidence from bone microstructure.

Authors:  Alexandra Houssaye; Paul Tafforeau; Christian de Muizon; Philip D Gingerich
Journal:  PLoS One       Date:  2015-02-25       Impact factor: 3.240

4.  Morphometric analysis of lungfish endocasts elucidates early dipnoan palaeoneurological evolution.

Authors:  Alice M Clement; Tom J Challands; Richard Cloutier; Laurent Houle; Per E Ahlberg; Shaun P Collin; John A Long
Journal:  Elife       Date:  2022-07-12       Impact factor: 8.713

5.  Synchrotron phase-contrast microtomography of coprolites generates novel palaeobiological data.

Authors:  Martin Qvarnström; Grzegorz Niedźwiedzki; Paul Tafforeau; Živil Žigaitė; Per E Ahlberg
Journal:  Sci Rep       Date:  2017-06-02       Impact factor: 4.379

6.  Multiscale three-dimensional imaging of intact human organs down to the cellular scale using hierarchical phase-contrast tomography.

Authors:  C Walsh; P Tafforeau; Willi L Wagner; D J Jafree; A Bellier; C Werlein; M P Kühnel; E Boller; S Walker-Samuel; J L Robertus; D A Long; J Jacob; S Marussi; E Brown; N Holroyd; D D Jonigk; M Ackermann; P D Lee
Journal:  bioRxiv       Date:  2021-02-03
  6 in total

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