Literature DB >> 23912978

Complete genome sequence of Cannes 8 virus, a new member of the proposed family "Marseilleviridae".

Sarah Aherfi1, Isabelle Pagnier, Ghislain Fournous, Didier Raoult, Bernard La Scola, Philippe Colson.   

Abstract

Marseillevirus is a giant virus that was isolated in 2007 by culturing water collected from a cooling tower in Paris, France, on Acanthamoeba polyphaga. Since then, five other marseilleviruses have been detected in environmental or human samples. The genomes of two of the six marseilleviruses have been described in detail. We describe herein the genome of Cannes 8 virus, a new member of the proposed family "Marseilleviridae." Cannes 8 virus was isolated from water collected from a cooling tower in Cannes in southeastern France. Its genome is a circular double-stranded DNA molecule with 374,041 base pairs, larger than the Marseillevirus and Lausannevirus genomes. This genome harbors 484 open reading frames predicted to encode proteins with sizes ranging from 50 to 1,537 amino acids, among which 380 (79%) and 272 (56%) are bona fide orthologs of Marseillevirus and Lausannevirus proteins, respectively. In addition, 407 and 336 predicted proteins have significant hits against Marseillevirus and Lausannevirus proteins, respectively, and 294 proteins are shared by all three marseilleviruses. The Cannes 8 virus genome has a high level of collinearity (for 96% of orthologs) with the Marseillevirus genome. About two-thirds of the Cannes 8 virus gene repertoire is composed of family ORFans. The description and annotation of the genomes of new marseilleviruses that will undoubtedly be recovered from environmental or clinical samples will be helpful to increase our knowledge of the pan-genome of the family "Marseilleviridae."

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Year:  2013        PMID: 23912978     DOI: 10.1007/s11262-013-0965-4

Source DB:  PubMed          Journal:  Virus Genes        ISSN: 0920-8569            Impact factor:   2.332


  31 in total

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Authors:  Bernard La Scola; Stéphane Audic; Catherine Robert; Liang Jungang; Xavier de Lamballerie; Michel Drancourt; Richard Birtles; Jean-Michel Claverie; Didier Raoult
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Review 3.  Amoebae as genitors and reservoirs of giant viruses.

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5.  MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods.

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Journal:  Mol Biol Evol       Date:  2011-05-04       Impact factor: 16.240

6.  Lausannevirus, a giant amoebal virus encoding histone doublets.

Authors:  Vincent Thomas; Claire Bertelli; François Collyn; Nicola Casson; Amalio Telenti; Alexander Goesmann; Antony Croxatto; Gilbert Greub
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7.  Evidence of the megavirome in humans.

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8.  Proteinortho: detection of (co-)orthologs in large-scale analysis.

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Review 9.  How microbiology helps define the rhizome of life.

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Journal:  Front Cell Infect Microbiol       Date:  2012-05-04       Impact factor: 5.293

10.  CDD: conserved domains and protein three-dimensional structure.

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Journal:  Nucleic Acids Res       Date:  2012-11-28       Impact factor: 16.971

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  24 in total

1.  The Investigation of Promoter Sequences of Marseilleviruses Highlights a Remarkable Abundance of the AAATATTT Motif in Intergenic Regions.

Authors:  Graziele Pereira Oliveira; Maurício Teixeira Lima; Thalita Souza Arantes; Felipe Lopes Assis; Rodrigo Araújo Lima Rodrigues; Flávio Guimarães da Fonseca; Cláudio Antônio Bonjardim; Erna Geessien Kroon; Philippe Colson; Bernard La Scola; Jônatas Santos Abrahão
Journal:  J Virol       Date:  2017-10-13       Impact factor: 5.103

2.  Genome analysis of the first Marseilleviridae representative from Australia indicates that most of its genes contribute to virus fitness.

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3.  Pseudomonas aeruginosa Pangenome: Core and Accessory Genes of a Highly Resourceful Opportunistic Pathogen.

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Review 4.  Structure of large dsDNA viruses.

Authors:  Thomas Klose; Michael G Rossmann
Journal:  Biol Chem       Date:  2014-07       Impact factor: 3.915

Review 5.  A brief review of software tools for pangenomics.

Authors:  Jingfa Xiao; Zhewen Zhang; Jiayan Wu; Jun Yu
Journal:  Genomics Proteomics Bioinformatics       Date:  2015-02-23       Impact factor: 7.691

6.  Draft Genome Sequence of Tokyovirus, a Member of the Family Marseilleviridae Isolated from the Arakawa River of Tokyo, Japan.

Authors:  Masaharu Takemura
Journal:  Genome Announc       Date:  2016-06-09

Review 7.  Marseilleviruses: An Update in 2021.

Authors:  Dehia Sahmi-Bounsiar; Clara Rolland; Sarah Aherfi; Hadjer Boudjemaa; Anthony Levasseur; Bernard La Scola; Philippe Colson
Journal:  Front Microbiol       Date:  2021-06-02       Impact factor: 5.640

8.  BPGA- an ultra-fast pan-genome analysis pipeline.

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9.  A Brazilian Marseillevirus Is the Founding Member of a Lineage in Family Marseilleviridae.

Authors:  Fábio P Dornas; Felipe L Assis; Sarah Aherfi; Thalita Arantes; Jônatas S Abrahão; Philippe Colson; Bernard La Scola
Journal:  Viruses       Date:  2016-03-10       Impact factor: 5.048

Review 10.  Giant Viruses of Amoebas: An Update.

Authors:  Sarah Aherfi; Philippe Colson; Bernard La Scola; Didier Raoult
Journal:  Front Microbiol       Date:  2016-03-22       Impact factor: 5.640

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