Literature DB >> 23912586

High-throughput and long-term observation of compartmentalized biochemical oscillators.

Koshi Hasatani1, Mathieu Leocmach, Anthony J Genot, André Estévez-Torres, Teruo Fujii, Yannick Rondelez.   

Abstract

We report the splitting of an oscillating DNA circuit into ∼700 droplets with picoliter volumes. Upon incubation at constant temperature, the droplets display sustained oscillations that can be observed for more than a day. Superimposed to the bulk behaviour, we find two intriguing new phenomena - slow desynchronization between the compartments and kinematic spatial waves - and investigate their possible origin. This approach provides a route to study the influence of small volume effects in biology, and paves the way to technological applications of compartmentalized molecular programs controlling complex dynamics.

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Year:  2013        PMID: 23912586     DOI: 10.1039/c3cc44323j

Source DB:  PubMed          Journal:  Chem Commun (Camb)        ISSN: 1359-7345            Impact factor:   6.222


  15 in total

1.  Microscopic agents programmed by DNA circuits.

Authors:  G Gines; A S Zadorin; J-C Galas; T Fujii; A Estevez-Torres; Y Rondelez
Journal:  Nat Nanotechnol       Date:  2017-01-30       Impact factor: 39.213

2.  Computer-assisted design for scaling up systems based on DNA reaction networks.

Authors:  Nathanaël Aubert; Clément Mosca; Teruo Fujii; Masami Hagiya; Yannick Rondelez
Journal:  J R Soc Interface       Date:  2014-01-22       Impact factor: 4.118

3.  Diversity in the dynamical behaviour of a compartmentalized programmable biochemical oscillator.

Authors:  Maximilian Weitz; Jongmin Kim; Korbinian Kapsner; Erik Winfree; Elisa Franco; Friedrich C Simmel
Journal:  Nat Chem       Date:  2014-02-16       Impact factor: 24.427

4.  High-resolution mapping of bifurcations in nonlinear biochemical circuits.

Authors:  A J Genot; A Baccouche; R Sieskind; N Aubert-Kato; N Bredeche; J F Bartolo; V Taly; T Fujii; Y Rondelez
Journal:  Nat Chem       Date:  2016-06-20       Impact factor: 24.427

5.  DNA reaction networks: Providing a panoramic view.

Authors:  Fei Wang; Chunhai Fan
Journal:  Nat Chem       Date:  2016-07-21       Impact factor: 24.427

6.  Massively parallel and multiparameter titration of biochemical assays with droplet microfluidics.

Authors:  Alexandre Baccouche; Shu Okumura; Rémi Sieskind; Elia Henry; Nathanaël Aubert-Kato; Nicolas Bredeche; Jean-François Bartolo; Valérie Taly; Yannick Rondelez; Teruo Fujii; Anthony J Genot
Journal:  Nat Protoc       Date:  2017-08-24       Impact factor: 13.491

7.  Light-powered CO2 fixation in a chloroplast mimic with natural and synthetic parts.

Authors:  Tarryn E Miller; Thomas Beneyton; Thomas Schwander; Christoph Diehl; Mathias Girault; Richard McLean; Tanguy Chotel; Peter Claus; Niña Socorro Cortina; Jean-Christophe Baret; Tobias J Erb
Journal:  Science       Date:  2020-05-08       Impact factor: 47.728

8.  Noise control for molecular computing.

Authors:  Tomislav Plesa; Konstantinos C Zygalakis; David F Anderson; Radek Erban
Journal:  J R Soc Interface       Date:  2018-07       Impact factor: 4.118

9.  Systems and synthetic biology approaches in understanding biological oscillators.

Authors:  Zhengda Li; Qiong Yang
Journal:  Quant Biol       Date:  2017-11-02

10.  Pulse-density modulation control of chemical oscillation far from equilibrium in a droplet open-reactor system.

Authors:  Haruka Sugiura; Manami Ito; Tomoya Okuaki; Yoshihito Mori; Hiroyuki Kitahata; Masahiro Takinoue
Journal:  Nat Commun       Date:  2016-01-20       Impact factor: 14.919

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