Literature DB >> 23902960

A mathematical model of tryptophan metabolism via the kynurenine pathway provides insights into the effects of vitamin B-6 deficiency, tryptophan loading, and induction of tryptophan 2,3-dioxygenase on tryptophan metabolites.

Luisa Rios-Avila1, H Frederik Nijhout, Michael C Reed, Harry S Sitren, Jesse F Gregory.   

Abstract

Vitamin B-6 deficiency is associated with impaired tryptophan metabolism because of the coenzyme role of pyridoxal 5'-phosphate (PLP) for kynureninase and kynurenine aminotransferase. To investigate the underlying mechanism, we developed a mathematical model of tryptophan metabolism via the kynurenine pathway. The model includes mammalian data on enzyme kinetics and tryptophan transport from the intestinal lumen to liver, muscle, and brain. Regulatory mechanisms and inhibition of relevant enzymes were included. We simulated the effects of graded reduction in cellular PLP concentration, tryptophan loads and induction of tryptophan 2,3-dioxygenase (TDO) on metabolite profiles and urinary excretion. The model predictions matched experimental data and provided clarification of the response of metabolites in various extents of vitamin B-6 deficiency. We found that moderate deficiency yielded increased 3-hydroxykynurenine and a decrease in kynurenic acid and anthranilic acid. More severe deficiency also yielded an increase in kynurenine and xanthurenic acid and more pronounced effects on the other metabolites. Tryptophan load simulations with and without vitamin B-6 deficiency showed altered metabolite concentrations consistent with published data. Induction of TDO caused an increase in all metabolites, and TDO induction together with a simulated vitamin B-6 deficiency, as has been reported in oral contraceptive users, yielded increases in kynurenine, 3-hydroxykynurenine, and xanthurenic acid and decreases in kynurenic acid and anthranilic acid. These results show that the model successfully simulated tryptophan metabolism via the kynurenine pathway and can be used to complement experimental investigations.

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Year:  2013        PMID: 23902960      PMCID: PMC3743279          DOI: 10.3945/jn.113.174599

Source DB:  PubMed          Journal:  J Nutr        ISSN: 0022-3166            Impact factor:   4.798


  88 in total

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Authors:  C E DALGLIESH; W E KNOX; A NEUBERGER
Journal:  Nature       Date:  1951-07-07       Impact factor: 49.962

2.  The adaptive increase of the tryptophan peroxidase-oxidase system of liver.

Authors:  W E KNOX; A H MEHLER
Journal:  Science       Date:  1951-03-02       Impact factor: 47.728

3.  Tryptophan metabolism in vitamin B6-deficient mice.

Authors:  D A Bender; E N Njagi; P S Danielian
Journal:  Br J Nutr       Date:  1990-01       Impact factor: 3.718

4.  Computer simulation and analysis of tryptophan metabolism via kynurenine pathway in liver.

Authors:  F Heinmets
Journal:  Comput Biol Med       Date:  1974-09       Impact factor: 4.589

5.  Changes in kynurenine pathway metabolism in the brain, liver and kidney of aged female Wistar rats.

Authors:  Nady Braidy; Gilles J Guillemin; Hussein Mansour; Tailoi Chan-Ling; Ross Grant
Journal:  FEBS J       Date:  2011-11       Impact factor: 5.542

6.  Effect of oral contraceptives on the plasma concentration of pyridoxal phosphate.

Authors:  L Lumeng; R E Cleary; T K Li
Journal:  Am J Clin Nutr       Date:  1974-04       Impact factor: 7.045

Review 7.  Relationship between interferon-gamma, indoleamine 2,3-dioxygenase, and tryptophan catabolism.

Authors:  M W Taylor; G S Feng
Journal:  FASEB J       Date:  1991-08       Impact factor: 5.191

8.  Biochemical and phenotypic abnormalities in kynurenine aminotransferase II-deficient mice.

Authors:  Ping Yu; Nicholas A Di Prospero; Michael T Sapko; Tao Cai; Amy Chen; Miguel Melendez-Ferro; Fu Du; William O Whetsell; Paolo Guidetti; Robert Schwarcz; Danilo A Tagle
Journal:  Mol Cell Biol       Date:  2004-08       Impact factor: 4.272

9.  Protein synthesis in skeletal muscle of the perfused rat hemicorpus compared with rates in the intact animal.

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Journal:  Biochem J       Date:  1983-08-15       Impact factor: 3.857

10.  Control of the mRNA for hepatic tryptophan oxygenase during hormonal and substrate induction.

Authors:  G Schutz; L Killewich; G Chen; P Feigelson
Journal:  Proc Natl Acad Sci U S A       Date:  1975-03       Impact factor: 11.205

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  19 in total

1.  Kynurenine pathway metabolites: relevant to vitamin B-6 deficiency and beyond.

Authors:  Matthew A Ciorba
Journal:  Am J Clin Nutr       Date:  2013-08-28       Impact factor: 7.045

2.  Metabolite profile analysis reveals association of vitamin B-6 with metabolites related to one-carbon metabolism and tryptophan catabolism but not with biomarkers of inflammation in oral contraceptive users and reveals the effects of oral contraceptives on these processes.

Authors:  Luisa Rios-Avila; Bonnie Coats; Yueh-Yun Chi; Øivind Midttun; Per M Ueland; Peter W Stacpoole; Jesse F Gregory
Journal:  J Nutr       Date:  2014-11-19       Impact factor: 4.798

Review 3.  Direct and Functional Biomarkers of Vitamin B6 Status.

Authors:  Per Magne Ueland; Arve Ulvik; Luisa Rios-Avila; Øivind Midttun; Jesse F Gregory
Journal:  Annu Rev Nutr       Date:  2015-05-13       Impact factor: 11.848

4.  Pyridoxine supplementation does not alter in vivo kinetics of one-carbon metabolism but modifies patterns of one-carbon and tryptophan metabolites in vitamin B-6-insufficient oral contraceptive users.

Authors:  Luisa Rios-Avila; Bonnie Coats; Maria Ralat; Yueh-Yun Chi; Øivind Midttun; Per M Ueland; Peter W Stacpoole; Jesse F Gregory
Journal:  Am J Clin Nutr       Date:  2015-07-22       Impact factor: 7.045

5.  Metabolite profile analysis reveals functional effects of 28-day vitamin B-6 restriction on one-carbon metabolism and tryptophan catabolic pathways in healthy men and women.

Authors:  Vanessa R da Silva; Luisa Rios-Avila; Yvonne Lamers; Maria A Ralat; Øivind Midttun; Eoin P Quinlivan; Timothy J Garrett; Bonnie Coats; Meena N Shankar; Susan S Percival; Yueh-Yun Chi; Keith E Muller; Per Magne Ueland; Peter W Stacpoole; Jesse F Gregory
Journal:  J Nutr       Date:  2013-08-21       Impact factor: 4.798

6.  Increased Plasma Levels of Xanthurenic and Kynurenic Acids in Type 2 Diabetes.

Authors:  Gregory F Oxenkrug
Journal:  Mol Neurobiol       Date:  2015-06-09       Impact factor: 5.590

7.  IgA/IgM responses to tryptophan and tryptophan catabolites (TRYCATs) are differently associated with prenatal depression, physio-somatic symptoms at the end of term and premenstrual syndrome.

Authors:  Chutima Roomruangwong; Buranee Kanchanatawan; Sunee Sirivichayakul; George Anderson; André F Carvalho; Sebastien Duleu; Michel Geffard; Michael Maes
Journal:  Mol Neurobiol       Date:  2016-04-01       Impact factor: 5.590

8.  Characterization of the Metabolic Pathways of 4-Chlorobiphenyl (PCB3) in HepG2 Cells Using the Metabolite Profiles of Its Hydroxylated Metabolites.

Authors:  Chun-Yun Zhang; Susanne Flor; Patricia Ruiz; Gabriele Ludewig; Hans-Joachim Lehmler
Journal:  Environ Sci Technol       Date:  2021-06-14       Impact factor: 9.028

9.  Severity of DSS-induced colitis is reduced in Ido1-deficient mice with down-regulation of TLR-MyD88-NF-kB transcriptional networks.

Authors:  Woo-Jeong Shon; Young-Kwan Lee; Ji Hee Shin; Eun Young Choi; Dong-Mi Shin
Journal:  Sci Rep       Date:  2015-11-27       Impact factor: 4.379

Review 10.  Disturbed Amino Acid Metabolism in HIV: Association with Neuropsychiatric Symptoms.

Authors:  Johanna M Gostner; Kathrin Becker; Katharina Kurz; Dietmar Fuchs
Journal:  Front Psychiatry       Date:  2015-07-14       Impact factor: 4.157

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