Literature DB >> 23902030

Scaling analysis of bio-molecular dynamics derived from elastic incoherent neutron scattering experiments.

W Doster1, H Nakagawa, M S Appavou.   

Abstract

Numerous neutron scattering studies of bio-molecular dynamics employ a qualitative analysis of elastic scattering data and atomic mean square displacements. We provide a new quantitative approach showing that the intensity at zero energy exchange can be a rich source of information of bio-structural fluctuations on a pico- to nano-second time scale. Elastic intensity scans performed either as a function of the temperature (back-scattering) and∕or by varying the instrumental resolution (time of flight spectroscopy) yield the activation parameters of molecular motions and the approximate structural correlation function in the time domain. The two methods are unified by a scaling function, which depends on the ratio of correlation time and instrumental resolution time. The elastic scattering concept is illustrated with a dynamic characterization of alanine-dipeptide, protein hydration water, and water-coupled protein motions of lysozyme, per-deuterated c-phycocyanin (CPC) and hydrated myoglobin. The complete elastic scattering function versus temperature, momentum exchange, and instrumental resolution is analyzed instead of focusing on a single cross-over temperature of mean square displacements at the apparent onset temperature of an-harmonic motions. Our method predicts the protein dynamical transition (PDT) at Td from the collective (α) structural relaxation rates of the solvation shell as input. By contrast, the secondary (β) relaxation enhances the amplitude of fast local motions in the vicinity of the glass temperature Tg. The PDT is specified by step function in the elastic intensity leading from elastic to viscoelastic dynamic behavior at a transition temperature Td.

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Year:  2013        PMID: 23902030     DOI: 10.1063/1.4816513

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  5 in total

1.  Time domain versus energy domain neutron scattering analysis of protein dynamics.

Authors:  Wolfgang Doster
Journal:  Proc Natl Acad Sci U S A       Date:  2019-04-12       Impact factor: 11.205

2.  Dynamic footprint of sequestration in the molecular fluctuations of osteopontin.

Authors:  S Lenton; T Seydel; T Nylander; C Holt; M Härtlein; S Teixeira; G Zaccai
Journal:  J R Soc Interface       Date:  2015-09-06       Impact factor: 4.118

3.  Nanosecond structural dynamics of intrinsically disordered β-casein micelles by neutron spectroscopy.

Authors:  Hiroshi Nakagawa; Marie-Sousai Appavou; Joachim Wuttke; Michaela Zamponi; Olaf Holderer; Tobias E Schrader; Dieter Richter; Wolfgang Doster
Journal:  Biophys J       Date:  2021-10-28       Impact factor: 4.033

4.  Dynamics from elastic neutron-scattering via direct measurement of the running time-integral of the van Hove distribution function.

Authors:  Antonio Benedetto; Gordon J Kearley
Journal:  Sci Rep       Date:  2019-08-02       Impact factor: 4.379

5.  Experimental demonstration of the novel "van-Hove integral method (vHI)" for measuring diffusive dynamics by elastic neutron scattering.

Authors:  Antonio Benedetto; Gordon J Kearley
Journal:  Sci Rep       Date:  2021-07-08       Impact factor: 4.379

  5 in total

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