Literature DB >> 23901471

Advances in nanopore sequencing technology.

Yongqiang Yang1, Ruoyu Liu, Haiqiang Xie, Yanting Hui, Rengang Jiao, Yu Gong, Yiyu Zhang.   

Abstract

Much tremendous break through have been obtained in recent years for nanopore sequencing to achieve the goal of $1000 genome. As a method of single molecule sequencing, nanopore sequencing can discriminate the individual molecules of the target DNA strand rapidly due to the current blockages by translocating the nucleotides through a nano-scale pore. Both the protein-pores and solid-state nanopore channels which called single nanopore sequencing have been studied widely for the application of nanopore sequencing technology. This review will give a detail representation to protein nanopore and solid-state nanopore sequencing. For protein nanopore sequencing technology, we will introduce different nanopore types, device assembly and some challenges still exist at present. We will focus on more research fields for solid-state nanopore sequencing in terms of materials, device assembly, fabricated methods, translocation process and some specific challenges. The review also covers some of the technical advances in the union nanopore sequencing, which include nanopore sequencing combine with exonuclease, hybridization, synthesis and design polymer.

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Year:  2013        PMID: 23901471     DOI: 10.1166/jnn.2013.7756

Source DB:  PubMed          Journal:  J Nanosci Nanotechnol        ISSN: 1533-4880


  11 in total

1.  Detection of Protein Toxin Simulants from Contaminated Surfaces by Paper Spray Mass Spectrometry.

Authors:  William R A Wichert; Elizabeth S Dhummakupt; Chengsen Zhang; Phillip M Mach; Robert C Bernhards; Trevor Glaros; Nicholas E Manicke
Journal:  J Am Soc Mass Spectrom       Date:  2019-03-11       Impact factor: 3.109

Review 2.  Nanopore sequencing technology, bioinformatics and applications.

Authors:  Yunhao Wang; Yue Zhao; Audrey Bollas; Yuru Wang; Kin Fai Au
Journal:  Nat Biotechnol       Date:  2021-11-08       Impact factor: 54.908

3.  The Effect of Detergent, Temperature, and Lipid on the Oligomeric State of MscL Constructs: Insights from Mass Spectrometry.

Authors:  Eamonn Reading; Troy A Walton; Idlir Liko; Michael T Marty; Arthur Laganowsky; Douglas C Rees; Carol V Robinson
Journal:  Chem Biol       Date:  2015-05-21

Review 4.  Genomic and functional characteristics of human cytomegalovirus revealed by next-generation sequencing.

Authors:  Steven Sijmons; Marc Van Ranst; Piet Maes
Journal:  Viruses       Date:  2014-03-05       Impact factor: 5.048

Review 5.  Computational studies of DNA sequencing with solid-state nanopores: key issues and future prospects.

Authors:  Lijun Liang; Qi Wang; Hans Agren; Yaoquan Tu
Journal:  Front Chem       Date:  2014-02-21       Impact factor: 5.221

6.  Oxford Nanopore sequencing, hybrid error correction, and de novo assembly of a eukaryotic genome.

Authors:  Sara Goodwin; James Gurtowski; Scott Ethe-Sayers; Panchajanya Deshpande; Michael C Schatz; W Richard McCombie
Journal:  Genome Res       Date:  2015-10-07       Impact factor: 9.043

Review 7.  DNA Sequencing Sensors: An Overview.

Authors:  Jose Antonio Garrido-Cardenas; Federico Garcia-Maroto; Jose Antonio Alvarez-Bermejo; Francisco Manzano-Agugliaro
Journal:  Sensors (Basel)       Date:  2017-03-14       Impact factor: 3.576

8.  Antimicrobial resistance prediction and phylogenetic analysis of Neisseria gonorrhoeae isolates using the Oxford Nanopore MinION sequencer.

Authors:  Daniel Golparian; Valentina Donà; Leonor Sánchez-Busó; Sunniva Foerster; Simon Harris; Andrea Endimiani; Nicola Low; Magnus Unemo
Journal:  Sci Rep       Date:  2018-12-04       Impact factor: 4.379

Review 9.  Coronavirus Disease 2019 (COVID-19): Emerging detection technologies and auxiliary analysis.

Authors:  Ying Chen; Shengxiong Huang; Liuyan Zhou; Xin Wang; Huan Yang; Wenqing Li
Journal:  J Clin Lab Anal       Date:  2021-12-10       Impact factor: 2.352

10.  Comparative genomics of 26 complete circular genomes of 18 different serotypes of Actinobacillus pleuropneumoniae.

Authors:  Valentina Donà; Alban Ramette; Vincent Perreten
Journal:  Microb Genom       Date:  2022-02
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