Literature DB >> 23900252

Enhanced dissection of the regulatory genome.

Matthew Slattery1, Kevin P White.   

Abstract

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Year:  2013        PMID： 23900252     DOI： 10.1038/nmeth.2577

Source DB:  PubMed          Journal:  Nat Methods        ISSN： 1548-7091            Impact factor:   28.547


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  10 in total

1.  Genome-wide quantitative enhancer activity maps identified by STARR-seq.

Authors:  Cosmas D Arnold; Daniel Gerlach; Christoph Stelzer; Łukasz M Boryń; Martina Rath; Alexander Stark
Journal:  Science       Date:  2013-01-17       Impact factor: 47.728

Review 2.  Disentangling the many layers of eukaryotic transcriptional regulation.

Authors:  Katherine M Lelli; Matthew Slattery; Richard S Mann
Journal:  Annu Rev Genet       Date:  2012-08-28       Impact factor: 16.830

Review 3.  TAL effectors: customizable proteins for DNA targeting.

Authors:  Adam J Bogdanove; Daniel F Voytas
Journal:  Science       Date:  2011-09-30       Impact factor: 47.728

4.  Highly parallel assays of tissue-specific enhancers in whole Drosophila embryos.

Authors:  Stephen S Gisselbrecht; Luis A Barrera; Martin Porsch; Anton Aboukhalil; Preston W Estep; Anastasia Vedenko; Alexandre Palagi; Yongsok Kim; Xianmin Zhu; Brian W Busser; Caitlin E Gamble; Antonina Iagovitina; Aditi Singhania; Alan M Michelson; Martha L Bulyk
Journal:  Nat Methods       Date:  2013-07-14       Impact factor: 28.547

5.  A cis-regulatory map of the Drosophila genome.

Authors:  Nicolas Nègre; Christopher D Brown; Lijia Ma; Christopher Aaron Bristow; Steven W Miller; Ulrich Wagner; Pouya Kheradpour; Matthew L Eaton; Paul Loriaux; Rachel Sealfon; Zirong Li; Haruhiko Ishii; Rebecca F Spokony; Jia Chen; Lindsay Hwang; Chao Cheng; Richard P Auburn; Melissa B Davis; Marc Domanus; Parantu K Shah; Carolyn A Morrison; Jennifer Zieba; Sarah Suchy; Lionel Senderowicz; Alec Victorsen; Nicholas A Bild; A Jason Grundstad; David Hanley; David M MacAlpine; Mattias Mannervik; Koen Venken; Hugo Bellen; Robert White; Mark Gerstein; Steven Russell; Robert L Grossman; Bing Ren; James W Posakony; Manolis Kellis; Kevin P White
Journal:  Nature       Date:  2011-03-24       Impact factor: 49.962

6.  A resource for manipulating gene expression and analyzing cis-regulatory modules in the Drosophila CNS.

Authors:  Laurina Manning; Ellie S Heckscher; Maria D Purice; Jourdain Roberts; Alysha L Bennett; Jason R Kroll; Jill L Pollard; Marie E Strader; Josh R Lupton; Anna V Dyukareva; Phuong Nam Doan; David M Bauer; Allison N Wilbur; Stephanie Tanner; Jimmy J Kelly; Sen-Lin Lai; Khoa D Tran; Minoree Kohwi; Todd R Laverty; Joseph C Pearson; Stephen T Crews; Gerald M Rubin; Chris Q Doe
Journal:  Cell Rep       Date:  2012-10-11       Impact factor: 9.423

7.  A survey of 6,300 genomic fragments for cis-regulatory activity in the imaginal discs of Drosophila melanogaster.

Authors:  Aurélie Jory; Carlos Estella; Matt W Giorgianni; Matthew Slattery; Todd R Laverty; Gerald M Rubin; Richard S Mann
Journal:  Cell Rep       Date:  2012-10-12       Impact factor: 9.423

8.  Analysis of an even-skipped rescue transgene reveals both composite and discrete neuronal and early blastoderm enhancers, and multi-stripe positioning by gap gene repressor gradients.

Authors:  M Fujioka; Y Emi-Sarker; G L Yusibova; T Goto; J B Jaynes
Journal:  Development       Date:  1999-06       Impact factor: 6.868

9.  A GAL4-driver line resource for Drosophila neurobiology.

Authors:  Arnim Jenett; Gerald M Rubin; Teri-T B Ngo; David Shepherd; Christine Murphy; Heather Dionne; Barret D Pfeiffer; Amanda Cavallaro; Donald Hall; Jennifer Jeter; Nirmala Iyer; Dona Fetter; Joanna H Hausenfluck; Hanchuan Peng; Eric T Trautman; Robert R Svirskas; Eugene W Myers; Zbigniew R Iwinski; Yoshinori Aso; Gina M DePasquale; Adrianne Enos; Phuson Hulamm; Shing Chun Benny Lam; Hsing-Hsi Li; Todd R Laverty; Fuhui Long; Lei Qu; Sean D Murphy; Konrad Rokicki; Todd Safford; Kshiti Shaw; Julie H Simpson; Allison Sowell; Susana Tae; Yang Yu; Christopher T Zugates
Journal:  Cell Rep       Date:  2012-10-11       Impact factor: 9.423

10.  TALE-mediated modulation of transcriptional enhancers in vivo.

Authors:  Justin Crocker; David L Stern
Journal:  Nat Methods       Date:  2013-06-30       Impact factor: 28.547
  10 in total
  1 in total

Review 1.  Towards quantitative analysis of gene regulation by enhancers.

Authors:  Ekaterina V Nizovtseva; Stefjord Todolli; Wilma K Olson; Vasily M Studitsky
Journal:  Epigenomics       Date:  2017-08-11       Impact factor: 4.778
  1 in total

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