Literature DB >> 23896985

Directing transcription to the right way.

Fu Huang1, Jerry L Workman.   

Abstract

How cells ensure that productive transcription from divergent promoters is limited to the downstream protein-coding region is an important question in the transcription field. A recent study in Nature proposed an answer by revealing that the upstream antisense transcripts undergo early termination through the polyadenylation signal-dependent pathway, and the downstream sense transcripts are protected from premature cleavage by U1 small nuclear ribonucleoprotein (snRNP).

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Year:  2013        PMID: 23896985      PMCID: PMC3790231          DOI: 10.1038/cr.2013.100

Source DB:  PubMed          Journal:  Cell Res        ISSN: 1001-0602            Impact factor:   25.617


  10 in total

1.  Pausing of RNA polymerase II disrupts DNA-specified nucleosome organization to enable precise gene regulation.

Authors:  Daniel A Gilchrist; Gilberto Dos Santos; David C Fargo; Bin Xie; Yuan Gao; Leping Li; Karen Adelman
Journal:  Cell       Date:  2010-11-12       Impact factor: 41.582

2.  RNA exosome depletion reveals transcription upstream of active human promoters.

Authors:  Pascal Preker; Jesper Nielsen; Susanne Kammler; Søren Lykke-Andersen; Marianne S Christensen; Christophe K Mapendano; Mikkel H Schierup; Torben Heick Jensen
Journal:  Science       Date:  2008-12-04       Impact factor: 47.728

3.  Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters.

Authors:  Leighton J Core; Joshua J Waterfall; John T Lis
Journal:  Science       Date:  2008-12-04       Impact factor: 47.728

Review 4.  Divergent transcription: a new feature of active promoters.

Authors:  Amy C Seila; Leighton J Core; John T Lis; Phillip A Sharp
Journal:  Cell Cycle       Date:  2009-08-19       Impact factor: 4.534

5.  Gene loops enhance transcriptional directionality.

Authors:  Sue Mei Tan-Wong; Judith B Zaugg; Jurgi Camblong; Zhenyu Xu; David W Zhang; Hannah E Mischo; Aseem Z Ansari; Nicholas M Luscombe; Lars M Steinmetz; Nick J Proudfoot
Journal:  Science       Date:  2012-09-27       Impact factor: 47.728

6.  DNA topology and a minimal set of basal factors for transcription by RNA polymerase II.

Authors:  J D Parvin; P A Sharp
Journal:  Cell       Date:  1993-05-07       Impact factor: 41.582

7.  Divergent transcription from active promoters.

Authors:  Amy C Seila; J Mauro Calabrese; Stuart S Levine; Gene W Yeo; Peter B Rahl; Ryan A Flynn; Richard A Young; Phillip A Sharp
Journal:  Science       Date:  2008-12-04       Impact factor: 47.728

8.  U1 snRNP protects pre-mRNAs from premature cleavage and polyadenylation.

Authors:  Daisuke Kaida; Michael G Berg; Ihab Younis; Mumtaz Kasim; Larry N Singh; Lili Wan; Gideon Dreyfuss
Journal:  Nature       Date:  2010-09-29       Impact factor: 49.962

9.  PROMoter uPstream Transcripts share characteristics with mRNAs and are produced upstream of all three major types of mammalian promoters.

Authors:  Pascal Preker; Kristina Almvig; Marianne S Christensen; Eivind Valen; Christophe K Mapendano; Albin Sandelin; Torben Heick Jensen
Journal:  Nucleic Acids Res       Date:  2011-05-19       Impact factor: 16.971

10.  Promoter directionality is controlled by U1 snRNP and polyadenylation signals.

Authors:  Albert E Almada; Xuebing Wu; Andrea J Kriz; Christopher B Burge; Phillip A Sharp
Journal:  Nature       Date:  2013-06-23       Impact factor: 49.962

  10 in total
  3 in total

1.  TRAP150 activates splicing in composite terminal exons.

Authors:  Kuo-Ming Lee; Woan-Yuh Tarn
Journal:  Nucleic Acids Res       Date:  2014-10-17       Impact factor: 16.971

2.  Suppression of pervasive noncoding transcription in embryonic stem cells by esBAF.

Authors:  Sarah J Hainer; Weifeng Gu; Benjamin R Carone; Benjamin D Landry; Oliver J Rando; Craig C Mello; Thomas G Fazzio
Journal:  Genes Dev       Date:  2015-02-15       Impact factor: 11.361

3.  Yeast Sirtuin Family Members Maintain Transcription Homeostasis to Ensure Genome Stability.

Authors:  Jessica L Feldman; Craig L Peterson
Journal:  Cell Rep       Date:  2019-06-04       Impact factor: 9.423

  3 in total

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