Literature DB >> 23896278

Route of NCLDV evolution: the genomic accordion.

Jonathan Filée1.   

Abstract

Nucleo cytoplasmic large DNA virus (NCLDV) superfamily forms a diverse group of viruses that infects a wide range of eukaryotic hosts (e.g. vertebrates, insects, protests, etc.). These viruses are characterized by a huge range in genome size (between 100kb and 1.2Mb), coupled with an extraordinary diverse genomic repertoire. Here I will review some recent results that shed light on the origin and genome evolution of these viruses, introducing the idea that these viruses evolved using a complex process of genomic accordion that imply successive steps of genome expansions (duplication and gene transfers) and genome reduction, in addition to movement and amplification of diverse mobile genetic elements.
Copyright © 2013 Elsevier B.V. All rights reserved.

Mesh:

Year:  2013        PMID: 23896278     DOI: 10.1016/j.coviro.2013.07.003

Source DB:  PubMed          Journal:  Curr Opin Virol        ISSN: 1879-6257            Impact factor:   7.090


  30 in total

Review 1.  Living Organisms Author Their Read-Write Genomes in Evolution.

Authors:  James A Shapiro
Journal:  Biology (Basel)       Date:  2017-12-06

2.  Diversification of giant and large eukaryotic dsDNA viruses predated the origin of modern eukaryotes.

Authors:  Julien Guglielmini; Anthony C Woo; Mart Krupovic; Patrick Forterre; Morgan Gaia
Journal:  Proc Natl Acad Sci U S A       Date:  2019-09-10       Impact factor: 11.205

3.  Origin of giant viruses from smaller DNA viruses not from a fourth domain of cellular life.

Authors:  Natalya Yutin; Yuri I Wolf; Eugene V Koonin
Journal:  Virology       Date:  2014-07-17       Impact factor: 3.616

4.  Functional Genomic Analyses Reveal an Open Pan-genome for the Chloroviruses and a Potential for Genetic Innovation in New Isolates.

Authors:  Rodrigo A L Rodrigues; Victória F Queiroz; Jayadri Ghosh; David D Dunigan; James L Van Etten
Journal:  J Virol       Date:  2021-10-20       Impact factor: 6.549

5.  Multiple layers of chimerism in a single-stranded DNA virus discovered by deep sequencing.

Authors:  Mart Krupovic; Ning Zhi; Jungang Li; Gangqing Hu; Eugene V Koonin; Susan Wong; Sofiya Shevchenko; Keji Zhao; Neal S Young
Journal:  Genome Biol Evol       Date:  2015-04-02       Impact factor: 3.416

6.  Genomic comparison of closely related Giant Viruses supports an accordion-like model of evolution.

Authors:  Jonathan Filée
Journal:  Front Microbiol       Date:  2015-06-16       Impact factor: 5.640

7.  The Apis mellifera Filamentous Virus Genome.

Authors:  Laurent Gauthier; Scott Cornman; Ulrike Hartmann; François Cousserans; Jay D Evans; Joachim R de Miranda; Peter Neumann
Journal:  Viruses       Date:  2015-07-09       Impact factor: 5.048

8.  DNA transposons have colonized the genome of the giant virus Pandoravirus salinus.

Authors:  Cheng Sun; Cédric Feschotte; Zhiqiang Wu; Rachel Lockridge Mueller
Journal:  BMC Biol       Date:  2015-06-12       Impact factor: 7.431

9.  Comparative paleovirological analysis of crustaceans identifies multiple widespread viral groups.

Authors:  Gabriel Metegnier; Thomas Becking; Mohamed Amine Chebbi; Isabelle Giraud; Bouziane Moumen; Sarah Schaack; Richard Cordaux; Clément Gilbert
Journal:  Mob DNA       Date:  2015-09-16

10.  Pandoraviruses are highly derived phycodnaviruses.

Authors:  Natalya Yutin; Eugene V Koonin
Journal:  Biol Direct       Date:  2013-10-23       Impact factor: 4.540

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